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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035661 through 18771 annotations produced 1 hits


NF-YB-like (CG10477):

Annotation Number : CG10477
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035661
Gbrowse : chr3L:6026834-6027711 (-) // 100.0 //
Probeset : 1629050_at
Accessions : protein= NP_648010;, nucleotide= NM_139753;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // non-tracea
FlyMine data for FBgn0035661.
Homophila reports that CG10477 is a close match (4e-12) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
VDRC has 4 RNAi stocks for FBgn0035661 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.00Down
Head8 ± 10 of 4 0.00Down
Eye6 ± 11 of 4 0.01Down
Thoracicoabdominal ganglion8 ± 10 of 4 0.00Down
Salivary gland19 ± 21 of 4 0.03Down
Crop9 ± 10 of 4 0.00Down
Midgut5215 ± 934 of 4 8.50Up
Tubule10 ± 10 of 4 0.00Down
Hindgut11 ± 10 of 4 0.00Down
Heart7 ± 01 of 4 0.01Down
Fat body8 ± 10 of 4 0.01Down
Ovary6 ± 10 of 4 0.00Down
Testis7 ± 11 of 4 0.00Down
Male accessory glands13 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.01Down
Mated spermatheca7 ± 10 of 4 0.01Down
Adult carcass12 ± 40 of 4 0.00Down
Larval CNS5 ± 10 of 4 0.01Down
Larval Salivary gland9 ± 10 of 4 0.02Down
Larval midgut49 ± 64 of 4 0.08Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut8 ± 21 of 4 0.01Down
Larval fat body4 ± 10 of 4 0.00Down
Larval trachea2 ± 10 of 4 0.00Down
Larval carcass6 ± 20 of 4 0.01Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly612 ± 1094 of 4

Looking for FBgn0035661. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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