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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035667 through 18771 annotations produced 1 hits



Jonah 65A (Jon65Ai):

Annotation Number : CG10475
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035667
Gbrowse : chr3L:6046683-6047526 (-) // 100.0 //
Probeset : 1636460_at
Accessions : protein= NP_648015;, nucleotide= NM_139758;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0035667.
BDGP gene expression has embryonic in situ data for CG10475: 8 pix of staining in 1 body parts.
Homophila reports that CG10475 is a close match (3e-11) to human gene MTSP1;ST14 (NP_068813), a gene associated with Ichthyosis with hypotrichosis, 610765 (3).
BioGrid reports that CG10475 interacts with CG12581 .
TRiP has 1 RNAi stocks for FBgn0035667 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035667 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye7 ± 21 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.00Down
Crop2 ± 20 of 4 0.00Down
Midgut4675 ± 1774 of 4 6.60Up
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body1 ± 10 of 4 0.00Down
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands6 ± 20 of 4 0.00Down
Virgin spermatheca0 ± 00 of 4 0.00Down
Mated spermatheca0 ± 00 of 4 0.00Down
Adult carcass3 ± 10 of 4 0.00Down
Larval CNS7 ± 111 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut6154 ± 2224 of 4 8.71Up
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut9 ± 30 of 4 0.01Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea0 ± 10 of 4 0.00Down
Larval carcass3 ± 10 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly706 ± 1594 of 4

Looking for FBgn0035667. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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