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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035677 through 18771 annotations produced 1 hits



(CG13293):

Annotation Number : CG13293
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035677
Gbrowse : chr3L:6080368-6083134 (+) // 100.0 //
Probeset : 1633296_at
Accessions : protein= NP_648024;, nucleotide= NM_139767;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035677.
BioGrid reports that CG13293 interacts with CG6175 CG6985 CG7570 CG7808 CG9638 .
TRiP has 1 RNAi stocks for FBgn0035677 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035677 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 14 of 4 7.30Up
Head5 ± 31 of 4 1.50None
Eye9 ± 10 of 4 2.78Up
Thoracicoabdominal ganglion20 ± 24 of 4 6.10Up
Salivary gland18 ± 60 of 4 5.35None
Crop3 ± 10 of 4 1.00None
Midgut4 ± 10 of 4 1.40None
Tubule5 ± 10 of 4 1.50None
Hindgut3 ± 10 of 4 0.90None
Heart4 ± 00 of 4 1.19None
Fat body4 ± 20 of 4 1.33None
Ovary2 ± 10 of 4 0.70None
Testis5 ± 00 of 4 1.50None
Male accessory glands3 ± 10 of 4 1.10None
Virgin spermatheca6 ± 10 of 4 1.96None
Mated spermatheca5 ± 00 of 4 1.76None
Adult carcass7 ± 20 of 4 2.30None
Larval CNS19 ± 24 of 4 5.81Up
Larval Salivary gland7 ± 10 of 4 2.30None
Larval midgut6 ± 10 of 4 1.82None
Larval tubule14 ± 13 of 4 4.20Up
Larval hindgut2 ± 00 of 4 0.86None
Larval fat body3 ± 10 of 4 1.10None
Larval trachea3 ± 30 of 4 1.15None
Larval carcass2 ± 00 of 4 0.68None
S2 cells (growing)4 ± 10 of 4 1.39None
Whole fly3 ± 10 of 4

Looking for FBgn0035677. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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