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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035678 through 18771 annotations produced 1 hits



(CG10469):

Annotation Number : CG10469
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035678
Gbrowse : chr3L:6085322-6086185 (-) // 100.0 //
Probeset : 1630363_at
Accessions : protein= NP_648025;, nucleotide= NM_139768;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0035678.
Homophila reports that CG10469 is a close match (5e-11) to human gene C2 (NP_000054), a gene associated with C2 deficiency (3);{Macular degeneration, age-related, reduced risk of}, 603075 (3).
BioGrid reports that CG10469 interacts with CG9614 .
VDRC has 1 RNAi stocks for FBgn0035678 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 24 of 4 0.30Down
Head25 ± 23 of 4 0.30Down
Eye27 ± 04 of 4 0.34Down
Thoracicoabdominal ganglion31 ± 24 of 4 0.40Down
Salivary gland69 ± 64 of 4 0.87None
Crop78 ± 44 of 4 1.00None
Midgut74 ± 14 of 4 0.90None
Tubule373 ± 594 of 4 4.70Up
Hindgut310 ± 404 of 4 3.90Up
Heart57 ± 44 of 4 0.72None
Fat body33 ± 64 of 4 0.41Down
Ovary14 ± 14 of 4 0.20Down
Testis5 ± 20 of 4 0.10Down
Male accessory glands22 ± 11 of 4 0.30Down
Virgin spermatheca349 ± 1234 of 4 4.34None
Mated spermatheca443 ± 974 of 4 5.52Up
Adult carcass47 ± 104 of 4 0.60None
Larval CNS33 ± 44 of 4 0.41Down
Larval Salivary gland36 ± 44 of 4 0.46Down
Larval midgut41 ± 44 of 4 0.52Down
Larval tubule435 ± 144 of 4 5.40Up
Larval hindgut21 ± 34 of 4 0.26Down
Larval fat body79 ± 34 of 4 1.00None
Larval trachea27 ± 24 of 4 0.34Down
Larval carcass37 ± 24 of 4 0.46Down
S2 cells (growing)50 ± 14 of 4 0.63None
Whole fly80 ± 104 of 4

Looking for FBgn0035678. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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