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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035686 through 18771 annotations produced 1 hits



CG12330 (Cpr65Az):

Annotation Number : CG12330
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035686
Gbrowse : chr3L:6153913-6154689 (+) // 100.0 //
Probeset : 1637998_at
Accessions : protein= NP_648031;, nucleotide= NM_139774;
Pathway : DNA-dependent // inferred from electronic annotation"
FlyMine data for FBgn0035686.
VDRC has 3 RNAi stocks for FBgn0035686 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.70None
Head3 ± 10 of 4 1.10None
Eye4 ± 10 of 4 1.37None
Thoracicoabdominal ganglion1 ± 00 of 4 0.30None
Salivary gland6 ± 20 of 4 1.68None
Crop0 ± 00 of 4 0.20None
Midgut2 ± 00 of 4 0.70None
Tubule3 ± 10 of 4 0.90None
Hindgut0 ± 00 of 4 0.20None
Heart2 ± 00 of 4 0.64None
Fat body2 ± 00 of 4 0.56None
Ovary2 ± 10 of 4 0.80None
Testis3 ± 10 of 4 0.90None
Male accessory glands6 ± 10 of 4 1.70None
Virgin spermatheca1 ± 00 of 4 0.48None
Mated spermatheca1 ± 00 of 4 0.41None
Adult carcass5 ± 10 of 4 1.40None
Larval CNS1 ± 10 of 4 0.42None
Larval Salivary gland2 ± 00 of 4 0.60None
Larval midgut2 ± 10 of 4 0.74None
Larval tubule2 ± 00 of 4 0.60None
Larval hindgut2 ± 00 of 4 0.68None
Larval fat body2 ± 00 of 4 0.60None
Larval trachea3 ± 30 of 4 1.11None
Larval carcass5 ± 10 of 4 1.49None
S2 cells (growing)3 ± 10 of 4 1.04None
Whole fly3 ± 10 of 4

Looking for FBgn0035686. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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