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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035689 through 18771 annotations produced 1 hits



(CG7376):

Annotation Number : CG7376
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035689
Gbrowse : chr3L:6167347-6171873 (+) // 99.9 //
Probeset : 1623124_at
Accessions : protein= NP_648034;, nucleotide= NM_139777;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0035689.
VDRC has 1 RNAi stocks for FBgn0035689 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 34 of 4 1.00None
Head13 23 of 4 0.60None
Eye3 11 of 4 0.17Down
Thoracicoabdominal ganglion18 13 of 4 0.80None
Salivary gland20 41 of 4 0.91None
Crop17 24 of 4 0.80None
Midgut16 13 of 4 0.70None
Tubule14 13 of 4 0.60Down
Hindgut13 04 of 4 0.60None
Heart9 12 of 4 0.44Down
Fat body10 31 of 4 0.46Down
Ovary57 64 of 4 2.50Up
Testis68 34 of 4 3.00Up
Male accessory glands14 21 of 4 0.60None
Virgin spermatheca11 04 of 4 0.49Down
Mated spermatheca12 12 of 4 0.53Down
Adult carcass11 21 of 4 0.50Down
Larval CNS25 104 of 4 1.11None
Larval Salivary gland7 10 of 4 0.33Down
Larval midgut8 01 of 4 0.38Down
Larval tubule20 04 of 4 0.90None
Larval hindgut10 14 of 4 0.46Down
Larval fat body23 43 of 4 1.00None
Larval trachea8 21 of 4 0.37Down
Larval carcass9 12 of 4 0.40Down
S2 cells (growing)49 24 of 4 2.16Up
Whole fly22 34 of 4

Looking for FBgn0035689. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime