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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035690 through 18771 annotations produced 1 hits



(CG10274):

Annotation Number : CG10274
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035690
Gbrowse : chr3L:6171778-6174883 (-) // 100.0 //
Probeset : 1632443_at
Accessions : protein= NP_001097525; /// NP_648035;, nucleotide= NM_001104055; /// NM_139778;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0035690.
Homophila reports that CG10274 is a close match (5e-11) to human gene AITD3;ZFAT1;ZNF406 (NP_065914), a gene associated with {Autoimmune thyroid disease, susceptibility to, 3}, 608175 (3).
BioGrid reports that CG10274 interacts with CG12847 CG13389 CG1478 CG15436 CG17050 CG7386 CG8159 CG8229 CG8495 .
TRiP has 1 RNAi stocks for FBgn0035690 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035690 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 14 of 4 1.00None
Head26 43 of 4 0.70None
Eye13 14 of 4 0.39Down
Thoracicoabdominal ganglion34 24 of 4 1.00None
Salivary gland42 14 of 4 1.22Up
Crop46 64 of 4 1.30None
Midgut29 24 of 4 0.90None
Tubule20 13 of 4 0.60Down
Hindgut44 44 of 4 1.30None
Heart13 14 of 4 0.38Down
Fat body28 63 of 4 0.81None
Ovary128 44 of 4 3.70Up
Testis7 10 of 4 0.20Down
Male accessory glands58 54 of 4 1.70Up
Virgin spermatheca30 14 of 4 0.86None
Mated spermatheca36 34 of 4 1.03None
Adult carcass20 21 of 4 0.60Down
Larval CNS79 114 of 4 2.27Up
Larval Salivary gland65 84 of 4 1.88Up
Larval midgut26 44 of 4 0.74None
Larval tubule32 44 of 4 0.90None
Larval hindgut29 24 of 4 0.84None
Larval fat body26 22 of 4 0.80None
Larval trachea18 34 of 4 0.53Down
Larval carcass29 44 of 4 0.83None
S2 cells (growing)64 24 of 4 1.84Up
Whole fly35 24 of 4

Looking for FBgn0035690. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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