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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035692 through 18771 annotations produced 1 hits



(CG13298):

Annotation Number : CG13298
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035692
Gbrowse : chr3L:6185217-6186286 (-) // 100.0 //
Probeset : 1630953_at
Accessions : protein= NP_648037;, nucleotide= NM_139780;
Pathway : via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation /// 000705
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0071011 // precatalytic spliceosome // inferred from direc
FlyMine data for FBgn0035692.
BDGP gene expression has embryonic in situ data for CG13298: 11 pix of staining in 23 body parts.
BioGrid reports that CG13298 interacts with CG4066 .
TRiP has 2 RNAi stocks for FBgn0035692 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035692 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain326 ± 54 of 4 0.80Down
Head373 ± 104 of 4 0.90Down
Eye813 ± 94 of 4 1.95Up
Thoracicoabdominal ganglion298 ± 24 of 4 0.70Down
Salivary gland576 ± 224 of 4 1.38Up
Crop420 ± 124 of 4 1.00None
Midgut440 ± 54 of 4 1.10Up
Tubule196 ± 54 of 4 0.50Down
Hindgut346 ± 54 of 4 0.80Down
Heart373 ± 144 of 4 0.90None
Fat body324 ± 294 of 4 0.78Down
Ovary706 ± 124 of 4 1.70Up
Testis446 ± 154 of 4 1.10None
Male accessory glands608 ± 144 of 4 1.50Up
Virgin spermatheca260 ± 74 of 4 0.63Down
Mated spermatheca272 ± 94 of 4 0.65Down
Adult carcass263 ± 174 of 4 0.60Down
Larval CNS1395 ± 954 of 4 3.35Up
Larval Salivary gland735 ± 194 of 4 1.77Up
Larval midgut618 ± 234 of 4 1.49Up
Larval tubule833 ± 74 of 4 2.00Up
Larval hindgut533 ± 214 of 4 1.28Up
Larval fat body781 ± 554 of 4 1.90Up
Larval trachea836 ± 654 of 4 2.01Up
Larval carcass761 ± 1534 of 4 1.83None
S2 cells (growing)688 ± 114 of 4 1.65Up
Whole fly416 ± 64 of 4

Looking for FBgn0035692. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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