Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035694 through 18771 annotations produced 1 hits



(CG13299):

Annotation Number : CG13299
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035694
Gbrowse : chr3L:6225022-6225424 (-) // 100.0 //
Probeset : 1627182_at
Accessions : protein= NP_648039;, nucleotide= NM_139782;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035694.
BioGrid reports that CG13299 interacts with CG5346 .
VDRC has 3 RNAi stocks for FBgn0035694 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head7 ± 22 of 4 0.00Down
Eye8 ± 02 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland7 ± 30 of 4 0.01Down
Crop2 ± 00 of 4 0.00Down
Midgut6 ± 00 of 4 0.00Down
Tubule7 ± 11 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart5 ± 00 of 4 0.01Down
Fat body4 ± 31 of 4 0.01Down
Ovary942 ± 544 of 4 1.90Up
Testis1 ± 00 of 4 0.00Down
Male accessory glands99 ± 34 of 4 0.20Down
Virgin spermatheca3 ± 00 of 4 0.01Down
Mated spermatheca3 ± 20 of 4 0.01Down
Adult carcass23 ± 112 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland2 ± 10 of 4 0.01Down
Larval midgut2 ± 00 of 4 0.00Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.00Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea5 ± 10 of 4 0.01Down
Larval carcass0 ± 00 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly501 ± 714 of 4

Looking for FBgn0035694. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime