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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035699 through 18771 annotations produced 1 hits



(CG13300):

Annotation Number : CG13300
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035699
Gbrowse : chr3L:6324129-6325996 (-) // 100.0 //
Probeset : 1632935_at
Accessions : protein= NP_648043;, nucleotide= NM_139786;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035699.
BioGrid reports that CG13300 interacts with CG17085 .
VDRC has 2 RNAi stocks for FBgn0035699 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 14 of 4 1.90Up
Head8 21 of 4 1.10None
Eye7 11 of 4 0.89None
Thoracicoabdominal ganglion15 43 of 4 1.90None
Salivary gland10 20 of 4 1.30None
Crop15 23 of 4 2.00Up
Midgut7 20 of 4 0.90None
Tubule4 00 of 4 0.60Down
Hindgut4 10 of 4 0.50None
Heart3 10 of 4 0.40Down
Fat body5 30 of 4 0.73None
Ovary7 11 of 4 0.90None
Testis4 21 of 4 0.50None
Male accessory glands22 22 of 4 2.80Up
Virgin spermatheca1 00 of 4 0.22Down
Mated spermatheca2 00 of 4 0.32Down
Adult carcass5 10 of 4 0.80None
Larval CNS15 34 of 4 1.93Up
Larval Salivary gland12 32 of 4 1.53None
Larval midgut6 30 of 4 0.76None
Larval tubule7 10 of 4 0.90None
Larval hindgut5 10 of 4 0.73None
Larval fat body16 30 of 4 2.10None
Larval trachea9 32 of 4 1.15None
Larval carcass16 03 of 4 2.08Up
S2 cells (growing)10 12 of 4 1.31None
Whole fly7 10 of 4

Looking for FBgn0035699. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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