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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035703 through 18771 annotations produced 1 hits


Annotation Number : CG8270
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035703
Gbrowse : chr3L:6481775-6484053 (+) // 100.0 //
Probeset : 1628204_at
Accessions : protein= NP_648047;, nucleotide= NM_139790;
FlyMine data for FBgn0035703.
VDRC has 3 RNAi stocks for FBgn0035703 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 44 of 4 1.00None
Head36 24 of 4 0.60Down
Eye22 14 of 4 0.35Down
Thoracicoabdominal ganglion59 24 of 4 0.90None
Salivary gland72 54 of 4 1.15None
Crop48 54 of 4 0.80None
Midgut63 14 of 4 1.00None
Tubule30 04 of 4 0.50Down
Hindgut59 34 of 4 0.90None
Heart49 04 of 4 0.78Down
Fat body47 104 of 4 0.75Down
Ovary115 54 of 4 1.80Up
Testis27 24 of 4 0.40Down
Male accessory glands59 64 of 4 0.90None
Virgin spermatheca24 24 of 4 0.38Down
Mated spermatheca25 34 of 4 0.40Down
Adult carcass34 24 of 4 0.50Down
Larval CNS52 64 of 4 0.83None
Larval Salivary gland60 34 of 4 0.95None
Larval midgut51 24 of 4 0.82Down
Larval tubule95 64 of 4 1.50Up
Larval hindgut53 44 of 4 0.85None
Larval fat body57 64 of 4 0.90None
Larval trachea37 44 of 4 0.60Down
Larval carcass42 54 of 4 0.68Down
S2 cells (growing)53 24 of 4 0.84None
Whole fly63 34 of 4

Looking for FBgn0035703. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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