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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035704 through 18771 annotations produced 1 hits



(CG10144):

Annotation Number : CG10144
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035704
Gbrowse : chr3L:6484326-6488472 (-) // 100.0 //
Probeset : 1635773_at
Accessions : protein= NP_648048;, nucleotide= NM_139791;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic ann
FlyMine data for FBgn0035704.
BioGrid reports that CG10144 interacts with CG11183 .
VDRC has 2 RNAi stocks for FBgn0035704 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 ± 04 of 4 1.10None
Head31 ± 24 of 4 0.50Down
Eye32 ± 34 of 4 0.47Down
Thoracicoabdominal ganglion59 ± 34 of 4 0.90None
Salivary gland66 ± 34 of 4 0.96None
Crop54 ± 44 of 4 0.80Down
Midgut61 ± 24 of 4 0.90None
Tubule91 ± 34 of 4 1.30Up
Hindgut61 ± 44 of 4 0.90None
Heart73 ± 24 of 4 1.05None
Fat body37 ± 44 of 4 0.55Down
Ovary146 ± 54 of 4 2.10Up
Testis161 ± 34 of 4 2.30Up
Male accessory glands58 ± 44 of 4 0.80None
Virgin spermatheca49 ± 14 of 4 0.71Down
Mated spermatheca59 ± 24 of 4 0.86Down
Adult carcass43 ± 24 of 4 0.60Down
Larval CNS76 ± 24 of 4 1.10Up
Larval Salivary gland64 ± 14 of 4 0.93None
Larval midgut58 ± 34 of 4 0.85None
Larval tubule73 ± 34 of 4 1.10None
Larval hindgut63 ± 34 of 4 0.91None
Larval fat body47 ± 24 of 4 0.70Down
Larval trachea59 ± 44 of 4 0.85Down
Larval carcass45 ± 14 of 4 0.66Down
S2 cells (growing)70 ± 24 of 4 1.02None
Whole fly69 ± 04 of 4

Looking for FBgn0035704. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime