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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035707 through 18771 annotations produced 1 hits



RNase H-like (CG8368):

Annotation Number : CG8368
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035707
Gbrowse : chr3L:6597236-6601860 (+) // 100.0 //
Probeset : 1628537_s_at
Accessions : protein= NP_648050; /// NP_729177;, nucleotide= NM_139793; /// NM_168172;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred f
FlyMine data for FBgn0035707.
BDGP gene expression has embryonic in situ data for CG8368: 4 pix of staining in 1 body parts.
BioGrid reports that CG8368 interacts with CG8385 CG8588 CG8675 CG8929 CG8948 CG9036 CG9414 .
TRiP has 1 RNAi stocks for FBgn0035707 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035707 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 ± 14 of 4 0.40Down
Head97 ± 44 of 4 0.40Down
Eye83 ± 44 of 4 0.34Down
Thoracicoabdominal ganglion91 ± 24 of 4 0.40Down
Salivary gland84 ± 54 of 4 0.34Down
Crop99 ± 44 of 4 0.40Down
Midgut58 ± 64 of 4 0.20Down
Tubule79 ± 94 of 4 0.30Down
Hindgut77 ± 44 of 4 0.30Down
Heart83 ± 74 of 4 0.34Down
Fat body153 ± 104 of 4 0.62Down
Ovary258 ± 44 of 4 1.10None
Testis1309 ± 734 of 4 5.30Up
Male accessory glands188 ± 194 of 4 0.80None
Virgin spermatheca89 ± 24 of 4 0.36Down
Mated spermatheca118 ± 24 of 4 0.48Down
Adult carcass82 ± 64 of 4 0.30Down
Larval CNS151 ± 84 of 4 0.62Down
Larval Salivary gland147 ± 154 of 4 0.60Down
Larval midgut41 ± 14 of 4 0.17Down
Larval tubule29 ± 34 of 4 0.10Down
Larval hindgut83 ± 104 of 4 0.34Down
Larval fat body157 ± 584 of 4 0.60None
Larval trachea115 ± 124 of 4 0.47Down
Larval carcass107 ± 194 of 4 0.44Down
S2 cells (growing)144 ± 44 of 4 0.59Down
Whole fly245 ± 164 of 4

Looking for FBgn0035707. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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