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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035715 through 18771 annotations produced 1 hits


Annotation Number : CG10103
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035715
Gbrowse : chr3L:6747115-6749619 (-) // 100.0 //
Probeset : 1636812_at
Accessions : protein= NP_648058;, nucleotide= NM_139801;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035715.
BioGrid reports that CG10103 interacts with CG12082 CG4394 CG6842 CG10948 CG12001 CG12470 CG14639 CG2286 CG3213 CG4303 CG5977 CG8332 CG8472 CG9083 CG9436 CG6447 CG6478 .
TRiP has 1 RNAi stocks for FBgn0035715 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035715 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain210 84 of 4 1.10None
Head177 34 of 4 0.90None
Eye204 74 of 4 1.09None
Thoracicoabdominal ganglion238 144 of 4 1.30Up
Salivary gland499 324 of 4 2.65Up
Crop287 34 of 4 1.50Up
Midgut427 134 of 4 2.30Up
Tubule416 74 of 4 2.20Up
Hindgut274 54 of 4 1.50Up
Heart198 124 of 4 1.05None
Fat body205 374 of 4 1.09None
Ovary223 54 of 4 1.20Up
Testis66 34 of 4 0.40Down
Male accessory glands414 124 of 4 2.20Up
Virgin spermatheca331 124 of 4 1.76Up
Mated spermatheca320 94 of 4 1.70Up
Adult carcass211 114 of 4 1.10None
Larval CNS168 54 of 4 0.89None
Larval Salivary gland397 174 of 4 2.11Up
Larval midgut407 64 of 4 2.16Up
Larval tubule349 114 of 4 1.90Up
Larval hindgut305 54 of 4 1.62Up
Larval fat body224 114 of 4 1.20None
Larval trachea428 244 of 4 2.27Up
Larval carcass241 174 of 4 1.28Up
S2 cells (growing)414 204 of 4 2.20Up
Whole fly188 94 of 4

Looking for FBgn0035715. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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