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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035719 through 18771 annotations produced 2 hits



CG14821 (tow):

Annotation Number : S.C3L000873
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035719
Gbrowse : chr3L:6937790-6939547 (+) // 100.0 //
Probeset : 1640023_s_at
Accessions : protein= NP_001097526; /// NP_648061;, nucleotide= NM_001104056; /// NM_139804;
Pathway : 0005634 // nucleus // inferred from direct assay
FlyMine data for FBgn0035719.
BDGP gene expression has embryonic in situ data for CG14821: 9 pix of staining in 3 body parts.
VDRC has 1 RNAi stocks for FBgn0035719 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 24 of 4 9.50Up
Head12 33 of 4 2.70None
Eye16 04 of 4 3.63Up
Thoracicoabdominal ganglion26 14 of 4 5.80Up
Salivary gland9 20 of 4 2.07None
Crop4 00 of 4 1.00None
Midgut6 20 of 4 1.40None
Tubule3 00 of 4 0.80None
Hindgut5 10 of 4 1.10None
Heart7 11 of 4 1.54None
Fat body6 30 of 4 1.42None
Ovary3 00 of 4 0.70None
Testis2 00 of 4 0.50None
Male accessory glands6 10 of 4 1.30None
Virgin spermatheca3 00 of 4 0.69None
Mated spermatheca2 00 of 4 0.53Down
Adult carcass1 00 of 4 0.30Down
Larval CNS17 34 of 4 3.79Up
Larval Salivary gland6 20 of 4 1.31None
Larval midgut5 10 of 4 1.08None
Larval tubule5 20 of 4 1.10None
Larval hindgut4 10 of 4 0.85None
Larval fat body5 10 of 4 1.10None
Larval trachea7 30 of 4 1.51None
Larval carcass6 21 of 4 1.30None
S2 cells (growing)13 22 of 4 2.96Up
Whole fly4 01 of 4



CG14821 (tow):

Annotation Number : CG14821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035719
Gbrowse : chr3L:6936055-6941765 (+) // 100.0 //
Probeset : 1640773_at
Accessions : protein= NP_001097526; /// NP_648061;, nucleotide= NM_001104056; /// NM_139804;
Pathway : 0005634 // nucleus // inferred from direct assay
FlyMine data for FBgn0035719.
BDGP gene expression has embryonic in situ data for CG14821: 9 pix of staining in 3 body parts.
VDRC has 1 RNAi stocks for FBgn0035719 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain171 64 of 416.20Up
Head44 34 of 4 4.20Up
Eye57 44 of 4 5.46Up
Thoracicoabdominal ganglion113 54 of 410.70Up
Salivary gland1 00 of 4 0.13Down
Crop19 30 of 4 1.80None
Midgut10 20 of 4 1.00None
Tubule6 10 of 4 0.60Down
Hindgut19 10 of 4 1.90Up
Heart31 14 of 4 2.94Up
Fat body8 70 of 4 0.83None
Ovary2 10 of 4 0.30Down
Testis5 00 of 4 0.50Down
Male accessory glands3 00 of 4 0.30Down
Virgin spermatheca6 10 of 4 0.64None
Mated spermatheca8 10 of 4 0.79None
Adult carcass8 30 of 4 0.80None
Larval CNS80 24 of 4 7.62Up
Larval Salivary gland11 40 of 4 1.06None
Larval midgut4 10 of 4 0.41Down
Larval tubule7 20 of 4 0.70None
Larval hindgut19 10 of 4 1.80Up
Larval fat body13 20 of 4 1.30None
Larval trachea13 31 of 4 1.26None
Larval carcass22 30 of 4 2.14Up
S2 cells (growing)31 11 of 4 3.01Up
Whole fly10 10 of 4

Looking for FBgn0035719. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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