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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035722 through 18771 annotations produced 1 hits


Annotation Number : CG10075
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035722
Gbrowse : chr3L:6950045-6951199 (-) // 100.0 //
Probeset : 1636596_at
Accessions : protein= NP_648064;, nucleotide= NM_139807;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035722.
BDGP gene expression has embryonic in situ data for CG10075: 14 pix of staining in 14 body parts.
Homophila reports that CG10075 is a close match (1e-30) to human gene BFZB;C20orf44;CBP3;STQTL14;UQCC (NP_955781), a gene associated with [Stature quantitative trait locus 14], 612228 (3).
BioGrid reports that CG10075 interacts with CG11322 CG11661 CG7937 CG9911 .
VDRC has 4 RNAi stocks for FBgn0035722 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain201 44 of 4 0.90None
Head215 64 of 4 1.00None
Eye199 64 of 4 0.90None
Thoracicoabdominal ganglion247 84 of 4 1.10None
Salivary gland218 134 of 4 0.99None
Crop211 84 of 4 1.00None
Midgut153 54 of 4 0.70Down
Tubule199 54 of 4 0.90Down
Hindgut208 64 of 4 0.90None
Heart235 54 of 4 1.07None
Fat body222 114 of 4 1.01None
Ovary272 44 of 4 1.20Up
Testis131 14 of 4 0.60Down
Male accessory glands154 114 of 4 0.70Down
Virgin spermatheca254 104 of 4 1.15None
Mated spermatheca214 94 of 4 0.97None
Adult carcass315 104 of 4 1.40Up
Larval CNS111 54 of 4 0.50Down
Larval Salivary gland102 44 of 4 0.46Down
Larval midgut109 64 of 4 0.50Down
Larval tubule115 04 of 4 0.50Down
Larval hindgut144 124 of 4 0.66Down
Larval fat body108 24 of 4 0.50Down
Larval trachea152 14 of 4 0.69Down
Larval carcass152 144 of 4 0.69Down
S2 cells (growing)102 24 of 4 0.46Down
Whole fly220 94 of 4

Looking for FBgn0035722. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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