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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035727 through 18771 annotations produced 1 hits



(CG10063):

Annotation Number : CG10063
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035727
Gbrowse : chr3L:6964674-6965521 (-) // 100.0 //
Probeset : 1635439_at
Accessions : protein= NP_648068;, nucleotide= NM_139811;
FlyMine data for FBgn0035727.
VDRC has 3 RNAi stocks for FBgn0035727 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head6 ± 00 of 4 0.10Down
Eye4 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.10Down
Salivary gland11 ± 30 of 4 0.25Down
Crop5 ± 10 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule6 ± 00 of 4 0.10Down
Hindgut7 ± 10 of 4 0.20Down
Heart2 ± 00 of 4 0.06Down
Fat body6 ± 30 of 4 0.14Down
Ovary5 ± 01 of 4 0.10Down
Testis452 ± 94 of 4 9.70Up
Male accessory glands11 ± 20 of 4 0.20Down
Virgin spermatheca9 ± 02 of 4 0.20Down
Mated spermatheca6 ± 21 of 4 0.13Down
Adult carcass9 ± 30 of 4 0.20Down
Larval CNS4 ± 10 of 4 0.10Down
Larval Salivary gland10 ± 00 of 4 0.23Down
Larval midgut5 ± 10 of 4 0.12Down
Larval tubule5 ± 11 of 4 0.10Down
Larval hindgut8 ± 10 of 4 0.17Down
Larval fat body82 ± 354 of 4 1.80None
Larval trachea8 ± 41 of 4 0.18Down
Larval carcass9 ± 20 of 4 0.20Down
S2 cells (growing)16 ± 14 of 4 0.36Down
Whole fly46 ± 24 of 4

Looking for FBgn0035727. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime