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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035730 through 18771 annotations produced 1 hits


(CG17744):

Annotation Number : CG17744
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035730
Gbrowse : chr3L:7018900-7019881 (-) // 100.0 //
Probeset : 1623439_at
Accessions : protein= NP_648070;, nucleotide= NM_139813;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035730.
BDGP gene expression has embryonic in situ data for CG17744: 8 pix of staining in 1 body parts.
BioGrid reports that CG17744 interacts with CG6470 CG9802 CG4349 CG4882 CG6856 CG7172 CG33275 Dmel CG17162 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland8 ± 20 of 4 0.11Down
Crop0 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule4 ± 10 of 4 0.10Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body4 ± 10 of 4 0.05Down
Ovary0 ± 00 of 4 0.00Down
Testis999 ± 74 of 413.00Up
Male accessory glands5 ± 10 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.02Down
Adult carcass7 ± 20 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.04Down
Larval fat body152 ± 803 of 4 2.00None
Larval trachea5 ± 81 of 4 0.07Down
Larval carcass2 ± 00 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly77 ± 74 of 4

Looking for FBgn0035730. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime