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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035734 through 18771 annotations produced 3 hits



(CG14823):

Annotation Number : CG14823
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035734
Gbrowse : chr3L:7059413-7060698 (+) // 100.0 //
Probeset : 1641741_a_at
Accessions : protein= NP_648074; /// NP_729205; /// NP_729206; /// NP_729207;, nucleotide= NM_139817; /// NM_168186; /// NM_168187; /// NM_168188;
Interpro : 0003796 // lysozyme activity // inferred from electronic annotation
FlyMine data for FBgn0035734.
BDGP gene expression has embryonic in situ data for CG14823: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.20Down
Head134 164 of 4 5.30Up
Eye226 124 of 4 8.89Up
Thoracicoabdominal ganglion7 20 of 4 0.30Down
Salivary gland5 20 of 4 0.23Down
Crop4 20 of 4 0.20Down
Midgut1 00 of 4 0.10Down
Tubule5 00 of 4 0.20Down
Hindgut17 10 of 4 0.70Down
Heart125 194 of 4 4.94Up
Fat body265 584 of 410.44Up
Ovary1 00 of 4 0.10Down
Testis6 10 of 4 0.30Down
Male accessory glands4 10 of 4 0.20Down
Virgin spermatheca150 54 of 4 5.93Up
Mated spermatheca102 34 of 4 4.04Up
Adult carcass152 114 of 4 6.00Up
Larval CNS2 30 of 4 0.11Down
Larval Salivary gland8 10 of 4 0.34Down
Larval midgut2 10 of 4 0.11Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut6 10 of 4 0.24Down
Larval fat body22 60 of 4 0.90None
Larval trachea8 100 of 4 0.32Down
Larval carcass4 00 of 4 0.20Down
S2 cells (growing)3 00 of 4 0.12Down
Whole fly25 11 of 4



(CG14823):

Annotation Number : CG14823
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035734
Gbrowse : chr3L:7059413-7061335 (+) // 100.0 //
Probeset : 1624950_a_at
Accessions : protein= NP_648074; /// NP_729205; /// NP_729206; /// NP_729207;, nucleotide= NM_139817; /// NM_168186; /// NM_168187; /// NM_168188;
Interpro : 0003796 // lysozyme activity // inferred from electronic annotation
FlyMine data for FBgn0035734.
BDGP gene expression has embryonic in situ data for CG14823: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 30 of 4 0.30Down
Head203 84 of 4 4.50Up
Eye480 304 of 410.65Up
Thoracicoabdominal ganglion9 20 of 4 0.20Down
Salivary gland4 00 of 4 0.10Down
Crop3 10 of 4 0.10Down
Midgut2 00 of 4 0.00Down
Tubule5 10 of 4 0.10Down
Hindgut18 40 of 4 0.40Down
Heart218 294 of 4 4.84Up
Fat body306 674 of 4 6.79Up
Ovary1 00 of 4 0.00Down
Testis15 12 of 4 0.30Down
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca406 154 of 4 9.00Up
Mated spermatheca293 214 of 4 6.50Up
Adult carcass261 184 of 4 5.80Up
Larval CNS1 10 of 4 0.04Down
Larval Salivary gland6 20 of 4 0.15Down
Larval midgut5 10 of 4 0.12Down
Larval tubule4 30 of 4 0.10Down
Larval hindgut13 20 of 4 0.30Down
Larval fat body59 123 of 4 1.30None
Larval trachea17 90 of 4 0.38Down
Larval carcass7 30 of 4 0.16Down
S2 cells (growing)1 00 of 4 0.03Down
Whole fly45 31 of 4



(CG14823):

Annotation Number : CG14823
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035734
Gbrowse : chr3L:7059413-7060222 (+) // 100.0 //
Probeset : 1631711_at
Accessions : protein= NP_648074; /// NP_729205; /// NP_729206; /// NP_729207;, nucleotide= NM_139817; /// NM_168186; /// NM_168187; /// NM_168188;
Interpro : 0003796 // lysozyme activity // inferred from electronic annotation
FlyMine data for FBgn0035734.
BDGP gene expression has embryonic in situ data for CG14823: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.30None
Head6 22 of 4 8.50None
Eye7 03 of 4 9.66Up
Thoracicoabdominal ganglion0 00 of 4 1.10None
Salivary gland3 10 of 4 4.75None
Crop0 00 of 4 1.10None
Midgut0 00 of 4 0.30None
Tubule1 00 of 4 1.30None
Hindgut1 00 of 4 1.30None
Heart6 14 of 4 7.88Up
Fat body27 134 of 434.06Up
Ovary0 00 of 4 0.10None
Testis0 00 of 4 0.70None
Male accessory glands2 10 of 4 2.60None
Virgin spermatheca31 54 of 439.84Up
Mated spermatheca13 24 of 416.63Up
Adult carcass6 30 of 4 8.30None
Larval CNS1 11 of 4 1.34None
Larval Salivary gland0 00 of 4 1.06None
Larval midgut0 00 of 4 0.19None
Larval tubule1 00 of 4 1.50None
Larval hindgut0 00 of 4 0.75None
Larval fat body0 00 of 4 0.70None
Larval trachea0 00 of 4 0.88None
Larval carcass0 00 of 4 0.19None
S2 cells (growing)0 00 of 4 0.38None
Whole fly0 00 of 4

Looking for FBgn0035734. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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