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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035735 through 18771 annotations produced 1 hits



CG8640 (Cpr65Ea):

Annotation Number : CG8640
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035735
Gbrowse : chr3L:7079218-7079668 (-) // 100.0 //
Probeset : 1625143_at
Accessions : protein= NP_648075;, nucleotide= NM_139818;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0035735.
BioGrid reports that CG8640 interacts with CG9429 .
VDRC has 3 RNAi stocks for FBgn0035735 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20None
Head1 00 of 4 0.20None
Eye0 00 of 4 0.09None
Thoracicoabdominal ganglion2 00 of 4 0.30None
Salivary gland9 10 of 4 1.27None
Crop6 30 of 4 0.90None
Midgut3 00 of 4 0.40None
Tubule2 00 of 4 0.40Down
Hindgut4 10 of 4 0.60None
Heart2 10 of 4 0.34None
Fat body3 00 of 4 0.50None
Ovary6 10 of 4 0.80None
Testis5 00 of 4 0.70None
Male accessory glands8 00 of 4 1.10None
Virgin spermatheca2 00 of 4 0.39None
Mated spermatheca3 10 of 4 0.48None
Adult carcass9 30 of 4 1.30None
Larval CNS1 00 of 4 0.25None
Larval Salivary gland2 00 of 4 0.31None
Larval midgut3 00 of 4 0.51None
Larval tubule5 10 of 4 0.70None
Larval hindgut9 10 of 4 1.28None
Larval fat body7 30 of 4 1.00None
Larval trachea6 50 of 4 0.89None
Larval carcass25 20 of 4 3.45Up
S2 cells (growing)6 10 of 4 0.87None
Whole fly7 20 of 4

Looking for FBgn0035735. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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