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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035736 through 18771 annotations produced 1 hits



CG8638 (Cpr65Eb):

Annotation Number : CG8638
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035736
Gbrowse : chr3L:7080806-7081885 (-) // 100.0 //
Probeset : 1641393_at
Accessions : protein= NP_648076;, nucleotide= NM_139819;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0035736.
BDGP gene expression has embryonic in situ data for CG8638: 14 pix of staining in 4 body parts.
VDRC has 1 RNAi stocks for FBgn0035736 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.70None
Head5 10 of 4 1.00None
Eye4 10 of 4 0.94None
Thoracicoabdominal ganglion5 10 of 4 1.00None
Salivary gland22 20 of 4 4.27Up
Crop12 10 of 4 2.50Up
Midgut5 10 of 4 1.00None
Tubule9 10 of 4 1.80Up
Hindgut10 10 of 4 2.10None
Heart2 10 of 4 0.52None
Fat body15 51 of 4 2.99Up
Ovary1 00 of 4 0.40None
Testis1 00 of 4 0.30None
Male accessory glands8 30 of 4 1.60None
Virgin spermatheca8 20 of 4 1.57None
Mated spermatheca9 30 of 4 1.85None
Adult carcass12 10 of 4 2.30Up
Larval CNS8 20 of 4 1.70None
Larval Salivary gland12 20 of 4 2.38Up
Larval midgut13 10 of 4 2.60Up
Larval tubule7 10 of 4 1.40None
Larval hindgut6 10 of 4 1.17None
Larval fat body3 20 of 4 0.70None
Larval trachea3 20 of 4 0.65None
Larval carcass14 10 of 4 2.87Up
S2 cells (growing)9 01 of 4 1.74None
Whole fly5 10 of 4

Looking for FBgn0035736. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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