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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035741 through 18771 annotations produced 1 hits



BBS1 (BBS1):

Annotation Number : CG14825
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035741
Gbrowse : chr3L:7118730-7120988 (+) // 100.0 //
Probeset : 1624339_at
Accessions : protein= NP_648080;, nucleotide= NM_139823;
FlyMine data for FBgn0035741.
Homophila reports that CG14825 is a close match (5e-62) to human gene BBS1 (NP_078925), a gene associated with Bardet-Biedl syndrome 1, 209900 (3).
VDRC has 2 RNAi stocks for FBgn0035741 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head5 ± 10 of 4 1.30None
Eye4 ± 10 of 4 1.23None
Thoracicoabdominal ganglion0 ± 00 of 4 0.20None
Salivary gland3 ± 10 of 4 0.87None
Crop6 ± 20 of 4 1.70None
Midgut0 ± 00 of 4 0.20None
Tubule5 ± 10 of 4 1.40None
Hindgut4 ± 20 of 4 1.10None
Heart1 ± 00 of 4 0.32None
Fat body3 ± 40 of 4 0.85None
Ovary1 ± 00 of 4 0.50None
Testis8 ± 10 of 4 2.30None
Male accessory glands1 ± 00 of 4 0.30None
Virgin spermatheca2 ± 10 of 4 0.54None
Mated spermatheca1 ± 00 of 4 0.38None
Adult carcass10 ± 20 of 4 2.70None
Larval CNS0 ± 00 of 4 0.12None
Larval Salivary gland7 ± 20 of 4 1.94None
Larval midgut2 ± 00 of 4 0.52None
Larval tubule4 ± 10 of 4 1.10None
Larval hindgut2 ± 10 of 4 0.62None
Larval fat body10 ± 30 of 4 2.70None
Larval trachea1 ± 10 of 4 0.46None
Larval carcass1 ± 00 of 4 0.40None
S2 cells (growing)3 ± 00 of 4 0.79None
Whole fly3 ± 10 of 4

Looking for FBgn0035741. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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