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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035755 through 18771 annotations produced 1 hits


Annotation Number : CG14830
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035755
Gbrowse : chr3L:7243811-7257017 (-) // 100.0 //
Probeset : 1633839_at
Accessions : protein= NP_648095;, nucleotide= NM_139838;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035755.
BDGP gene expression has embryonic in situ data for CG14830: 17 pix of staining in 8 body parts.
BioGrid reports that CG14830 interacts with CG2617 CG3541 CG1746 CG2199 .
VDRC has 3 RNAi stocks for FBgn0035755 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.10Down
Head113 44 of 4 2.40Up
Eye56 44 of 4 1.22None
Thoracicoabdominal ganglion5 10 of 4 0.10Down
Salivary gland165 94 of 4 3.54Up
Crop862 254 of 418.50Up
Midgut17 11 of 4 0.40Down
Tubule42 24 of 4 0.90None
Hindgut781 184 of 416.70Up
Heart9 10 of 4 0.20Down
Fat body14 51 of 4 0.32Down
Ovary3 10 of 4 0.10Down
Testis16 24 of 4 0.30Down
Male accessory glands149 94 of 4 3.20Up
Virgin spermatheca124 54 of 4 2.67Up
Mated spermatheca153 104 of 4 3.28Up
Adult carcass153 44 of 4 3.30Up
Larval CNS4 10 of 4 0.10Down
Larval Salivary gland55 54 of 4 1.19None
Larval midgut14 11 of 4 0.31Down
Larval tubule6 10 of 4 0.10Down
Larval hindgut419 284 of 4 8.99Up
Larval fat body6 20 of 4 0.10Down
Larval trachea629 384 of 413.49Up
Larval carcass279 184 of 4 5.98Up
S2 cells (growing)2 00 of 4 0.04Down
Whole fly46 24 of 4

Looking for FBgn0035755. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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