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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035756 through 18771 annotations produced 3 hits



unc-13-4A (unc-13-4A):

Annotation Number : CG32381
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035756
Gbrowse : chr3L:7261248-7278087 (-) // 100.0 //
Probeset : 1633793_at
Accessions : protein= NP_648096;, nucleotide= NM_139839;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035756.
Homophila reports that CG32381 is a close match (3e-113) to human gene FHL3;HLH3;HPLH3;MUNC13-4;UNC13D (NP_954712), a gene associated with Hemophagocytic lymphohistiocytosis, familial, 3, 608898 (3).
TRiP has 1 RNAi stocks for FBgn0035756 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035756 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain259 ± 84 of 443.00Up
Head42 ± 24 of 4 7.10Up
Eye13 ± 33 of 4 2.31None
Thoracicoabdominal ganglion126 ± 64 of 421.10Up
Salivary gland21 ± 33 of 4 3.61Up
Crop9 ± 11 of 4 1.60None
Midgut13 ± 10 of 4 2.20Up
Tubule6 ± 10 of 4 1.10None
Hindgut6 ± 10 of 4 1.00None
Heart6 ± 00 of 4 1.10None
Fat body21 ± 63 of 4 3.51Up
Ovary2 ± 00 of 4 0.30None
Testis54 ± 14 of 4 9.10Up
Male accessory glands14 ± 32 of 4 2.50None
Virgin spermatheca47 ± 44 of 4 7.93Up
Mated spermatheca50 ± 144 of 4 8.44Up
Adult carcass2 ± 10 of 4 0.40None
Larval CNS76 ± 44 of 412.61Up
Larval Salivary gland6 ± 11 of 4 1.10None
Larval midgut22 ± 21 of 4 3.66Up
Larval tubule2 ± 10 of 4 0.40None
Larval hindgut7 ± 10 of 4 1.30None
Larval fat body2 ± 00 of 4 0.40None
Larval trachea29 ± 44 of 4 4.93Up
Larval carcass3 ± 10 of 4 0.66None
S2 cells (growing)0 ± 00 of 4 0.16None
Whole fly6 ± 11 of 4



unc-13-4A (unc-13-4A):

Annotation Number : CT34648
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035756
Gbrowse : chr3L:7275249-7275519 (-) // 100.0 //
Probeset : 1629016_s_at
Accessions : protein= NP_648096;, nucleotide= NM_139839;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035756.
TRiP has 1 RNAi stocks for FBgn0035756 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035756 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.50None
Head1 ± 00 of 4 0.80None
Eye0 ± 00 of 4 0.45None
Thoracicoabdominal ganglion2 ± 00 of 4 1.40None
Salivary gland2 ± 00 of 4 1.49None
Crop2 ± 00 of 4 1.40None
Midgut4 ± 00 of 4 2.60Up
Tubule2 ± 00 of 4 1.30Up
Hindgut2 ± 00 of 4 1.50None
Heart1 ± 00 of 4 0.60None
Fat body2 ± 10 of 4 1.59None
Ovary1 ± 00 of 4 0.80None
Testis2 ± 00 of 4 1.10None
Male accessory glands2 ± 00 of 4 1.40None
Virgin spermatheca2 ± 00 of 4 1.30None
Mated spermatheca2 ± 00 of 4 1.34None
Adult carcass3 ± 00 of 4 2.10Up
Larval CNS1 ± 00 of 4 0.89None
Larval Salivary gland3 ± 00 of 4 1.63Up
Larval midgut3 ± 00 of 4 1.93None
Larval tubule3 ± 00 of 4 1.60None
Larval hindgut2 ± 00 of 4 1.30None
Larval fat body3 ± 00 of 4 2.10None
Larval trachea1 ± 00 of 4 0.97None
Larval carcass3 ± 00 of 4 1.84Up
S2 cells (growing)2 ± 00 of 4 1.18None
Whole fly1 ± 00 of 4



unc-13-4A (unc-13-4A):

Annotation Number : CT34649
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035756
Gbrowse : chr3L:7277693-7278137 (-) // 100.0 //
Probeset : 1627740_s_at
Accessions : protein= NP_648096;, nucleotide= NM_139839;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035756.
TRiP has 1 RNAi stocks for FBgn0035756 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035756 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 11 of 4 5.10Up
Head3 ± 10 of 4 1.40None
Eye2 ± 10 of 4 0.95None
Thoracicoabdominal ganglion8 ± 20 of 4 3.50None
Salivary gland7 ± 10 of 4 3.06Up
Crop4 ± 10 of 4 1.90None
Midgut2 ± 00 of 4 0.80None
Tubule2 ± 00 of 4 0.80None
Hindgut4 ± 10 of 4 1.70None
Heart1 ± 00 of 4 0.66None
Fat body2 ± 10 of 4 0.89None
Ovary1 ± 00 of 4 0.70None
Testis0 ± 00 of 4 0.40None
Male accessory glands3 ± 10 of 4 1.50None
Virgin spermatheca2 ± 00 of 4 0.97None
Mated spermatheca1 ± 00 of 4 0.70None
Adult carcass5 ± 40 of 4 2.40None
Larval CNS2 ± 10 of 4 1.03None
Larval Salivary gland7 ± 30 of 4 3.26None
Larval midgut3 ± 00 of 4 1.60None
Larval tubule1 ± 00 of 4 0.80None
Larval hindgut2 ± 00 of 4 0.94None
Larval fat body2 ± 00 of 4 0.90None
Larval trachea1 ± 00 of 4 0.44None
Larval carcass3 ± 10 of 4 1.44None
S2 cells (growing)1 ± 00 of 4 0.74None
Whole fly2 ± 00 of 4

Looking for FBgn0035756. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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