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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035760 through 18771 annotations produced 1 hits



(CG8607):

Annotation Number : CG8607
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035760
Gbrowse : chr3L:7313169-7314248 (+) // 100.0 //
Probeset : 1628587_at
Accessions : protein= NP_648100;, nucleotide= NM_139843;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0035760.
TRiP has 1 RNAi stocks for FBgn0035760 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035760 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 14 of 4 0.50Down
Head27 ± 44 of 4 0.40Down
Eye39 ± 34 of 4 0.59Down
Thoracicoabdominal ganglion36 ± 14 of 4 0.50Down
Salivary gland48 ± 23 of 4 0.72Down
Crop39 ± 14 of 4 0.60Down
Midgut30 ± 14 of 4 0.40Down
Tubule19 ± 21 of 4 0.30Down
Hindgut39 ± 24 of 4 0.60Down
Heart28 ± 24 of 4 0.43Down
Fat body32 ± 21 of 4 0.47Down
Ovary134 ± 54 of 4 2.00Up
Testis5 ± 10 of 4 0.10Down
Male accessory glands85 ± 54 of 4 1.30None
Virgin spermatheca31 ± 34 of 4 0.47Down
Mated spermatheca39 ± 43 of 4 0.58Down
Adult carcass22 ± 30 of 4 0.30Down
Larval CNS42 ± 44 of 4 0.63Down
Larval Salivary gland37 ± 44 of 4 0.55Down
Larval midgut21 ± 12 of 4 0.32Down
Larval tubule18 ± 00 of 4 0.30Down
Larval hindgut46 ± 14 of 4 0.69Down
Larval fat body14 ± 21 of 4 0.20Down
Larval trachea37 ± 64 of 4 0.55Down
Larval carcass34 ± 44 of 4 0.51Down
S2 cells (growing)25 ± 04 of 4 0.38Down
Whole fly67 ± 54 of 4

Looking for FBgn0035760. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime