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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035762 through 18771 annotations produced 1 hits



(CG8605):

Annotation Number : CG8605
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035762
Gbrowse : chr3L:7316728-7319358 (+) // 100.0 //
Probeset : 1636308_at
Accessions : protein= NP_648102;, nucleotide= NM_139845;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035762.
BioGrid reports that CG8605 interacts with CG9170 .
VDRC has 3 RNAi stocks for FBgn0035762 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 ± 34 of 4 0.90None
Head52 ± 24 of 4 0.60Down
Eye42 ± 34 of 4 0.52Down
Thoracicoabdominal ganglion83 ± 54 of 4 1.00None
Salivary gland140 ± 74 of 4 1.74Up
Crop61 ± 24 of 4 0.80Down
Midgut47 ± 64 of 4 0.60Down
Tubule48 ± 64 of 4 0.60Down
Hindgut46 ± 34 of 4 0.60Down
Heart71 ± 54 of 4 0.88None
Fat body78 ± 124 of 4 0.97None
Ovary125 ± 84 of 4 1.50Up
Testis71 ± 14 of 4 0.90None
Male accessory glands200 ± 124 of 4 2.50Up
Virgin spermatheca70 ± 24 of 4 0.88None
Mated spermatheca84 ± 24 of 4 1.05None
Adult carcass65 ± 64 of 4 0.80None
Larval CNS88 ± 74 of 4 1.09None
Larval Salivary gland255 ± 174 of 4 3.16Up
Larval midgut51 ± 14 of 4 0.63Down
Larval tubule50 ± 34 of 4 0.60Down
Larval hindgut69 ± 14 of 4 0.86None
Larval fat body62 ± 104 of 4 0.80None
Larval trachea95 ± 154 of 4 1.18None
Larval carcass81 ± 34 of 4 1.01None
S2 cells (growing)173 ± 44 of 4 2.14Up
Whole fly80 ± 54 of 4

Looking for FBgn0035762. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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