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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035767 through 18771 annotations produced 1 hits


Annotation Number : CG8596
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035767
Gbrowse : chr3L:7334982-7338281 (-) // 100.0 //
Probeset : 1626645_at
Accessions : protein= NP_648107;, nucleotide= NM_139850;
FlyMine data for FBgn0035767.
BDGP gene expression has embryonic in situ data for CG8596: 28 pix of staining in 3 body parts.
Homophila reports that CG8596 is a close match (5e-81) to human gene MFSD8;MGC33302 (NP_689991), a gene associated with Ceroid lipofuscinosis, neuronal, 7, 610951 (3).
VDRC has 3 RNAi stocks for FBgn0035767 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 24 of 4 0.20Down
Head90 14 of 4 0.90None
Eye106 64 of 4 1.10None
Thoracicoabdominal ganglion24 24 of 4 0.20Down
Salivary gland91 94 of 4 0.95None
Crop419 54 of 4 4.40Up
Midgut191 34 of 4 2.00Up
Tubule637 704 of 4 6.60Up
Hindgut275 34 of 4 2.90Up
Heart388 104 of 4 4.03Up
Fat body336 384 of 4 3.49Up
Ovary14 13 of 4 0.10Down
Testis82 34 of 4 0.90None
Male accessory glands90 74 of 4 0.90None
Virgin spermatheca98 74 of 4 1.02None
Mated spermatheca76 84 of 4 0.80None
Adult carcass248 224 of 4 2.60Up
Larval CNS19 13 of 4 0.20Down
Larval Salivary gland73 84 of 4 0.76None
Larval midgut212 84 of 4 2.20Up
Larval tubule928 494 of 4 9.60Up
Larval hindgut224 194 of 4 2.33Up
Larval fat body105 144 of 4 1.10None
Larval trachea69 114 of 4 0.72None
Larval carcass350 954 of 4 3.64None
S2 cells (growing)100 24 of 4 1.05None
Whole fly96 94 of 4

Looking for FBgn0035767. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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