FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035769 through 18771 annotations produced 3 hits

CTCF (CTCF):

Annotation Number : CG8591
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035769
Gbrowse : chr3L:7349029-7349796 (-) // 100.0 //
Probeset : 1626500_a_at
Accessions : protein= NP_648109;, nucleotide= NM_139852;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding tran
FlyMine data for FBgn0035769.
BDGP gene expression has embryonic in situ data for CTCF: 34 pix of staining in 7 body parts.
Homophila reports that CG8591 is a close match (6e-11) to human gene GLI2;HPE9 (NP_005261), a gene associated with Holoprosencephaly-9, 610829 (3);Pituitary anomalies with holoprosencephaly-like features (3).
TRiP has 2 RNAi stocks for FBgn0035769 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035769 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	15 ± 1	4 of 4	0.90	None
Head	8 ± 2	2 of 4	0.50	None
Eye	2 ± 0	0 of 4	0.12	Down
Thoracicoabdominal ganglion	10 ± 1	1 of 4	0.60	Down
Salivary gland	2 ± 0	0 of 4	0.14	Down
Crop	10 ± 1	2 of 4	0.60	Down
Midgut	6 ± 0	0 of 4	0.40	Down
Tubule	1 ± 0	0 of 4	0.10	Down
Hindgut	8 ± 1	1 of 4	0.50	Down
Heart	1 ± 0	0 of 4	0.09	Down
Fat body	5 ± 3	0 of 4	0.33	Down
Ovary	45 ± 4	4 of 4	2.70	Up
Testis	4 ± 0	1 of 4	0.30	Down
Male accessory glands	3 ± 1	0 of 4	0.20	Down
Virgin spermatheca	5 ± 1	0 of 4	0.33	Down
Mated spermatheca	4 ± 0	0 of 4	0.28	Down
Adult carcass	6 ± 2	0 of 4	0.40	Down
Larval CNS	5 ± 1	3 of 4	0.34	Down
Larval Salivary gland	2 ± 0	0 of 4	0.14	Down
Larval midgut	4 ± 1	0 of 4	0.29	Down
Larval tubule	8 ± 1	1 of 4	0.50	Down
Larval hindgut	4 ± 0	0 of 4	0.29	Down
Larval fat body	5 ± 2	0 of 4	0.30	Down
Larval trachea	2 ± 1	1 of 4	0.17	Down
Larval carcass	0 ± 0	0 of 4	0.05	Down
S2 cells (growing)	19 ± 1	4 of 4	1.15	None
Whole fly	16 ± 1	3 of 4

CTCF (CTCF):

Annotation Number : CG8591
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035769
Gbrowse : chr3L:7346676-7349796 (-) // 100.0 //
Probeset : 1627546_at
Accessions : protein= NP_648109;, nucleotide= NM_139852;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding tran
FlyMine data for FBgn0035769.
BDGP gene expression has embryonic in situ data for CTCF: 34 pix of staining in 7 body parts.
Homophila reports that CG8591 is a close match (6e-11) to human gene GLI2;HPE9 (NP_005261), a gene associated with Holoprosencephaly-9, 610829 (3);Pituitary anomalies with holoprosencephaly-like features (3).
TRiP has 2 RNAi stocks for FBgn0035769 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035769 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	132 ± 4	4 of 4	1.20	Up
Head	73 ± 2	4 of 4	0.70	Down
Eye	90 ± 6	4 of 4	0.80	None
Thoracicoabdominal ganglion	107 ± 1	4 of 4	1.00	None
Salivary gland	96 ± 3	4 of 4	0.85	None
Crop	86 ± 5	4 of 4	0.80	Down
Midgut	41 ± 3	4 of 4	0.40	Down
Tubule	68 ± 1	4 of 4	0.60	Down
Hindgut	50 ± 1	4 of 4	0.40	Down
Heart	48 ± 2	4 of 4	0.43	Down
Fat body	53 ± 5	4 of 4	0.48	Down
Ovary	385 ± 9	4 of 4	3.40	Up
Testis	35 ± 1	4 of 4	0.30	Down
Male accessory glands	105 ± 3	4 of 4	0.90	None
Virgin spermatheca	105 ± 12	4 of 4	0.93	None
Mated spermatheca	110 ± 6	4 of 4	0.98	None
Adult carcass	56 ± 5	4 of 4	0.50	Down
Larval CNS	177 ± 10	4 of 4	1.57	Up
Larval Salivary gland	90 ± 2	4 of 4	0.80	Down
Larval midgut	37 ± 3	4 of 4	0.33	Down
Larval tubule	44 ± 4	4 of 4	0.40	Down
Larval hindgut	44 ± 1	4 of 4	0.39	Down
Larval fat body	39 ± 2	2 of 4	0.30	Down
Larval trachea	90 ± 8	4 of 4	0.80	Down
Larval carcass	61 ± 3	4 of 4	0.54	Down
S2 cells (growing)	97 ± 3	4 of 4	0.86	None
Whole fly	113 ± 7	4 of 4

CTCF (CTCF):

Annotation Number : CG8591
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035769
Gbrowse : chr3L:7349029-7349796 (-) // 100.0 //
Probeset : 1636485_at
Accessions : protein= NP_648109;, nucleotide= NM_139852;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding tran
FlyMine data for FBgn0035769.
BDGP gene expression has embryonic in situ data for CTCF: 34 pix of staining in 7 body parts.
Homophila reports that CG8591 is a close match (6e-11) to human gene GLI2;HPE9 (NP_005261), a gene associated with Holoprosencephaly-9, 610829 (3);Pituitary anomalies with holoprosencephaly-like features (3).
TRiP has 2 RNAi stocks for FBgn0035769 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035769 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 0	4 of 4	2.00	None
Head	8 ± 0	2 of 4	2.20	None
Eye	4 ± 0	0 of 4	1.23	None
Thoracicoabdominal ganglion	13 ± 0	4 of 4	3.50	Up
Salivary gland	18 ± 3	2 of 4	4.91	Up
Crop	9 ± 1	3 of 4	2.50	Up
Midgut	9 ± 1	4 of 4	2.50	Up
Tubule	4 ± 0	0 of 4	1.10	None
Hindgut	7 ± 1	2 of 4	2.10	None
Heart	3 ± 0	2 of 4	0.97	None
Fat body	7 ± 0	0 of 4	1.93	None
Ovary	5 ± 0	4 of 4	1.50	None
Testis	2 ± 0	1 of 4	0.70	None
Male accessory glands	17 ± 1	4 of 4	4.70	Up
Virgin spermatheca	7 ± 1	0 of 4	2.04	None
Mated spermatheca	6 ± 1	1 of 4	1.63	None
Adult carcass	10 ± 3	1 of 4	2.90	None
Larval CNS	2 ± 1	0 of 4	0.66	None
Larval Salivary gland	10 ± 2	3 of 4	2.80	Up
Larval midgut	3 ± 0	0 of 4	0.84	None
Larval tubule	9 ± 1	4 of 4	2.40	Up
Larval hindgut	2 ± 0	0 of 4	0.79	None
Larval fat body	11 ± 1	2 of 4	3.10	Up
Larval trachea	2 ± 1	0 of 4	0.64	None
Larval carcass	3 ± 1	0 of 4	1.01	None
S2 cells (growing)	4 ± 0	0 of 4	1.13	None
Whole fly	3 ± 1	1 of 4

Looking for FBgn0035769. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720