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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035770 through 18771 annotations produced 1 hits



pastrel (pst):

Annotation Number : CG8588
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035770
Gbrowse : chr3L:7350372-7353363 (-) // 100.0 //
Probeset : 1640303_a_at
Accessions : protein= NP_729244; /// NP_729246;, nucleotide= NM_168207; /// NM_168209;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay
FlyMine data for FBgn0035770.
VDRC has 1 RNAi stocks for FBgn0035770 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain377 324 of 4 0.30Down
Head2084 604 of 4 1.70Up
Eye987 1494 of 4 0.78None
Thoracicoabdominal ganglion582 94 of 4 0.50Down
Salivary gland2564 744 of 4 2.03Up
Crop2915 904 of 4 2.30Up
Midgut3926 894 of 4 3.10Up
Tubule1520 164 of 4 1.20Up
Hindgut2141 474 of 4 1.70Up
Heart2264 494 of 4 1.79Up
Fat body3692 2374 of 4 2.92Up
Ovary511 34 of 4 0.40Down
Testis247 64 of 4 0.20Down
Male accessory glands1943 384 of 4 1.50Up
Virgin spermatheca4373 1614 of 4 3.46Up
Mated spermatheca4859 1894 of 4 3.85Up
Adult carcass2559 1064 of 4 2.00Up
Larval CNS149 54 of 4 0.12Down
Larval Salivary gland1993 394 of 4 1.58Up
Larval midgut4320 1934 of 4 3.42Up
Larval tubule508 384 of 4 0.40Down
Larval hindgut2047 424 of 4 1.62Up
Larval fat body3638 2624 of 4 2.90Up
Larval trachea1152 954 of 4 0.91None
Larval carcass1018 454 of 4 0.81Down
S2 cells (growing)1116 374 of 4 0.88Down
Whole fly1262 444 of 4

Looking for FBgn0035770. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime