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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035772 through 18771 annotations produced 1 hits



Sh3beta (Sh3beta):

Annotation Number : CG8582
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035772
Gbrowse : chr3L:7359940-7362355 (-) // 100.0 //
Probeset : 1625453_a_at
Accessions : protein= NP_648112; /// NP_729248;, nucleotide= NM_139855; /// NM_168210;
Interpro : 0017124 // SH3 domain binding // inferred from electronic annotation
FlyMine data for FBgn0035772.
BDGP gene expression has embryonic in situ data for Sh3beta: 6 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0035772 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain584 ± 204 of 4 1.00None
Head464 ± 334 of 4 0.80None
Eye1053 ± 594 of 4 1.89Up
Thoracicoabdominal ganglion630 ± 54 of 4 1.10None
Salivary gland419 ± 134 of 4 0.75None
Crop536 ± 204 of 4 1.00None
Midgut1349 ± 274 of 4 2.40Up
Tubule324 ± 114 of 4 0.60Down
Hindgut527 ± 184 of 4 0.90None
Heart608 ± 184 of 4 1.09None
Fat body455 ± 254 of 4 0.82None
Ovary883 ± 74 of 4 1.60Up
Testis379 ± 34 of 4 0.70Down
Male accessory glands1343 ± 384 of 4 2.40Up
Virgin spermatheca633 ± 244 of 4 1.13None
Mated spermatheca775 ± 494 of 4 1.39Up
Adult carcass334 ± 64 of 4 0.60Down
Larval CNS1339 ± 1324 of 4 2.40Up
Larval Salivary gland1679 ± 434 of 4 3.01Up
Larval midgut2488 ± 1174 of 4 4.45Up
Larval tubule2901 ± 1664 of 4 5.20Up
Larval hindgut1669 ± 1054 of 4 2.99Up
Larval fat body1154 ± 824 of 4 2.10Up
Larval trachea1343 ± 1254 of 4 2.41Up
Larval carcass735 ± 214 of 4 1.32Up
S2 cells (growing)2177 ± 324 of 4 3.90Up
Whole fly558 ± 494 of 4

Looking for FBgn0035772. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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