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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035776 through 18771 annotations produced 1 hits



(CG8564):

Annotation Number : CG8564
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035776
Gbrowse : chr3L:7378674-7380499 (-) // 100.0 //
Probeset : 1623295_at
Accessions : protein= NP_648115;, nucleotide= NM_139858;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activ
FlyMine data for FBgn0035776.
BDGP gene expression has embryonic in situ data for CG8564: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035776 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head3 10 of 4 0.00Down
Eye2 00 of 4 0.01Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland2 00 of 4 0.02Down
Crop8 10 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule5 00 of 4 0.00Down
Hindgut2 00 of 4 0.00Down
Heart0 00 of 4 0.00Down
Fat body2 20 of 4 0.02Down
Ovary2 01 of 4 0.00Down
Testis1666 264 of 4 9.40Up
Male accessory glands26 34 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca3 10 of 4 0.02Down
Adult carcass4 20 of 4 0.00Down
Larval CNS4 10 of 4 0.02Down
Larval Salivary gland3 20 of 4 0.02Down
Larval midgut4 11 of 4 0.03Down
Larval tubule5 10 of 4 0.00Down
Larval hindgut2 00 of 4 0.02Down
Larval fat body198 1094 of 4 1.10None
Larval trachea7 111 of 4 0.04Down
Larval carcass3 10 of 4 0.02Down
S2 cells (growing)3 10 of 4 0.02Down
Whole fly177 124 of 4

Looking for FBgn0035776. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime