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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035780 through 18771 annotations produced 1 hits


Annotation Number : CG18417
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035780
Gbrowse : chr3L:7393176-7394774 (+) // 100.0 //
Probeset : 1630590_at
Accessions : protein= NP_648119;, nucleotide= NM_139862;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activ
FlyMine data for FBgn0035780.
BDGP gene expression has embryonic in situ data for CG18417: 14 pix of staining in 4 body parts.
VDRC has 4 RNAi stocks for FBgn0035780 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head3 10 of 4 0.10Down
Eye1 10 of 4 0.04Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland5 20 of 4 0.11Down
Crop6 20 of 4 0.10Down
Midgut296 314 of 4 6.30Up
Tubule34 52 of 4 0.70Down
Hindgut746 274 of 415.90Up
Heart5 10 of 4 0.11Down
Fat body7 60 of 4 0.17Down
Ovary2 10 of 4 0.10Down
Testis2 00 of 4 0.00Down
Male accessory glands6 10 of 4 0.10Down
Virgin spermatheca5 10 of 4 0.11Down
Mated spermatheca9 20 of 4 0.21Down
Adult carcass2 00 of 4 0.10Down
Larval CNS7 20 of 4 0.15Down
Larval Salivary gland10 11 of 4 0.23Down
Larval midgut1411 1444 of 430.14Up
Larval tubule20 81 of 4 0.40Down
Larval hindgut1297 1014 of 427.70Up
Larval fat body11 10 of 4 0.30Down
Larval trachea4 30 of 4 0.10Down
Larval carcass1 00 of 4 0.03Down
S2 cells (growing)4 10 of 4 0.10Down
Whole fly46 44 of 4

Looking for FBgn0035780. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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