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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035787 through 18771 annotations produced 1 hits



(CG8543):

Annotation Number : CG8543
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035787
Gbrowse : chr3L:7462675-7463335 (-) // 100.0 //
Probeset : 1626743_at
Accessions : protein= NP_648126;, nucleotide= NM_139869;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity
FlyMine data for FBgn0035787.
VDRC has 4 RNAi stocks for FBgn0035787 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 20 of 4 3.50Up
Head41 40 of 4 5.90Up
Eye17 10 of 4 2.48Up
Thoracicoabdominal ganglion43 20 of 4 6.20Up
Salivary gland65 100 of 4 9.29Up
Crop48 00 of 4 6.90Up
Midgut76 20 of 410.90Up
Tubule34 10 of 4 4.80Up
Hindgut69 92 of 4 9.80Up
Heart15 20 of 4 2.26Up
Fat body50 130 of 4 7.12Up
Ovary15 50 of 4 2.10None
Testis4 00 of 4 0.60None
Male accessory glands55 40 of 4 7.80Up
Virgin spermatheca36 60 of 4 5.10Up
Mated spermatheca32 30 of 4 4.54Up
Adult carcass57 50 of 4 8.20Up
Larval CNS33 60 of 4 4.68Up
Larval Salivary gland45 80 of 4 6.48Up
Larval midgut66 110 of 4 9.48Up
Larval tubule49 10 of 4 7.00Up
Larval hindgut50 41 of 4 7.09Up
Larval fat body55 40 of 4 7.90Up
Larval trachea29 100 of 4 4.17Up
Larval carcass60 20 of 4 8.60Up
S2 cells (growing)29 90 of 4 4.17None
Whole fly7 10 of 4

Looking for FBgn0035787. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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