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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035788 through 18771 annotations produced 1 hits



(CG8541):

Annotation Number : CG8541
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035788
Gbrowse : chr3L:7464709-7465537 (+) // 100.0 //
Probeset : 1633445_at
Accessions : protein= NP_648127;, nucleotide= NM_139870;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0035788.
VDRC has 2 RNAi stocks for FBgn0035788 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.90None
Head0 ± 00 of 4 0.90None
Eye1 ± 00 of 4 1.27None
Thoracicoabdominal ganglion1 ± 00 of 4 1.40None
Salivary gland3 ± 10 of 4 3.84None
Crop1 ± 00 of 4 1.60None
Midgut1 ± 00 of 4 2.00None
Tubule1 ± 00 of 4 1.00None
Hindgut1 ± 00 of 4 1.30None
Heart3 ± 20 of 4 3.62None
Fat body1 ± 00 of 4 1.35None
Ovary1 ± 00 of 4 1.30None
Testis0 ± 00 of 4 0.70None
Male accessory glands2 ± 00 of 4 2.30Up
Virgin spermatheca1 ± 00 of 4 1.19None
Mated spermatheca1 ± 00 of 4 1.30None
Adult carcass2 ± 00 of 4 2.60None
Larval CNS1 ± 00 of 4 1.32None
Larval Salivary gland1 ± 00 of 4 1.51None
Larval midgut1 ± 00 of 4 1.54Up
Larval tubule1 ± 00 of 4 1.70None
Larval hindgut1 ± 00 of 4 1.43None
Larval fat body1 ± 00 of 4 2.10Up
Larval trachea1 ± 00 of 4 1.76None
Larval carcass2 ± 00 of 4 2.97None
S2 cells (growing)1 ± 00 of 4 1.35None
Whole fly0 ± 00 of 4

Looking for FBgn0035788. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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