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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035789 through 18771 annotations produced 1 hits



Mth-like 6 (mthl6):

Annotation Number : CG16992
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035789
Gbrowse : chr3L:7479169-7480943 (+) // 100.0 //
Probeset : 1625092_at
Accessions : protein= NP_788473;, nucleotide= NM_176295;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0035789.
TRiP has 1 RNAi stocks for FBgn0035789 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035789 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.40Down
Head4 10 of 4 0.70None
Eye2 10 of 4 0.40Down
Thoracicoabdominal ganglion3 10 of 4 0.60None
Salivary gland9 40 of 4 1.59None
Crop3 10 of 4 0.60None
Midgut4 10 of 4 0.70None
Tubule4 10 of 4 0.80None
Hindgut4 10 of 4 0.70None
Heart3 00 of 4 0.56Down
Fat body9 21 of 4 1.69Up
Ovary3 00 of 4 0.50Down
Testis9 04 of 4 1.70Up
Male accessory glands3 10 of 4 0.70None
Virgin spermatheca6 10 of 4 1.12None
Mated spermatheca4 10 of 4 0.80None
Adult carcass7 30 of 4 1.30None
Larval CNS3 11 of 4 0.63Down
Larval Salivary gland10 01 of 4 1.85Up
Larval midgut9 12 of 4 1.61None
Larval tubule71 124 of 412.40Up
Larval hindgut7 03 of 4 1.25None
Larval fat body56 104 of 4 9.90Up
Larval trachea23 34 of 4 4.14Up
Larval carcass51 94 of 4 9.02Up
S2 cells (growing)2 00 of 4 0.51Down
Whole fly5 02 of 4

Looking for FBgn0035789. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime