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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035792 through 18771 annotations produced 1 hits



(CG7548):

Annotation Number : CG7548
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035792
Gbrowse : chr3L:7498707-7499301 (-) // 100.0 //
Probeset : 1637288_at
Accessions : protein= NP_648131;, nucleotide= NM_139874;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0035792.
BioGrid reports that CG7548 interacts with CG7570 CG7697 CG9411 .
VDRC has 2 RNAi stocks for FBgn0035792 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.30None
Head1 ± 00 of 4 1.20None
Eye1 ± 00 of 4 1.67None
Thoracicoabdominal ganglion2 ± 20 of 4 2.30None
Salivary gland10 ± 30 of 4 9.33None
Crop2 ± 10 of 4 2.50None
Midgut3 ± 00 of 4 3.30Up
Tubule4 ± 10 of 4 3.50Up
Hindgut2 ± 00 of 4 2.40None
Heart0 ± 00 of 4 0.80None
Fat body7 ± 50 of 4 6.87None
Ovary1 ± 00 of 4 1.10None
Testis1 ± 00 of 4 0.90None
Male accessory glands2 ± 10 of 4 2.50None
Virgin spermatheca9 ± 10 of 4 7.85Up
Mated spermatheca6 ± 20 of 4 5.91None
Adult carcass6 ± 20 of 4 5.40None
Larval CNS1 ± 00 of 4 1.17None
Larval Salivary gland1 ± 00 of 4 1.26None
Larval midgut3 ± 10 of 4 3.30None
Larval tubule2 ± 10 of 4 2.50None
Larval hindgut3 ± 10 of 4 2.72None
Larval fat body1 ± 00 of 4 1.00None
Larval trachea1 ± 00 of 4 1.22None
Larval carcass5 ± 10 of 4 5.02Up
S2 cells (growing)0 ± 00 of 4 0.65None
Whole fly1 ± 00 of 4

Looking for FBgn0035792. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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