Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035793 through 18771 annotations produced 2 hits



/// Microsomal glutathione S-transferase-like (CG7546 /// Mgstl):

Annotation Number : CG1742
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025814
Gbrowse : chrX:20913515-20915141 (+) // 100.0 //
Probeset : 1627643_at
Accessions : protein= NP_524696; /// NP_728382;, nucleotide= NM_079957; /// NM_167724;
Pathway : 0005741 // mitochondrial outer membrane // inferred from sequence or structural similarity /// 0005792 // microsome // i
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0025814.
BDGP gene expression has embryonic in situ data for Mgstl: 11 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0025814 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 14 of 4 0.30None
Head275 594 of 4 6.90Up
Eye212 154 of 4 5.33Up
Thoracicoabdominal ganglion10 02 of 4 0.30None
Salivary gland10 21 of 4 0.25None
Crop9 01 of 4 0.20None
Midgut62 64 of 4 1.60None
Tubule11 10 of 4 0.30Down
Hindgut133 44 of 4 3.30Up
Heart103 204 of 4 2.60Up
Fat body109 524 of 4 2.75None
Ovary3 10 of 4 0.10None
Testis4 10 of 4 0.10None
Male accessory glands14 51 of 4 0.40None
Virgin spermatheca14 14 of 4 0.37None
Mated spermatheca9 12 of 4 0.23None
Adult carcass257 524 of 4 6.50Up
Larval CNS1 20 of 4 0.04Down
Larval Salivary gland1 00 of 4 0.04Down
Larval midgut4 10 of 4 0.10None
Larval tubule3 10 of 4 0.10None
Larval hindgut0 00 of 4 0.02Down
Larval fat body10 20 of 4 0.30None
Larval trachea3 21 of 4 0.08None
Larval carcass2 00 of 4 0.06Down
S2 cells (growing)2 10 of 4 0.07None
Whole fly39 114 of 4



(CG7546):

Annotation Number : CG7546
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035793
Gbrowse : chr3L:7504110-7509646 (+) // 100.0 //
Probeset : 1630483_a_at
Accessions : protein= NP_001137903; /// NP_001137904; /// NP_648132; /// NP_729264;, nucleotide= NM_001144431; /// NM_001144432; /// NM_139875; /// NM_168217;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035793.
BDGP gene expression has embryonic in situ data for CG7546: 4 pix of staining in 1 body parts.
BioGrid reports that CG7546 interacts with CG8620 CG9853 .
VDRC has 2 RNAi stocks for FBgn0035793 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain203 64 of 4 1.90Up
Head120 64 of 4 1.10None
Eye172 104 of 4 1.59Up
Thoracicoabdominal ganglion163 44 of 4 1.50Up
Salivary gland231 64 of 4 2.12Up
Crop161 44 of 4 1.50Up
Midgut97 44 of 4 0.90None
Tubule89 54 of 4 0.80Down
Hindgut123 44 of 4 1.10Up
Heart118 64 of 4 1.09None
Fat body103 204 of 4 0.95None
Ovary123 44 of 4 1.10Up
Testis160 94 of 4 1.50Up
Male accessory glands205 134 of 4 1.90Up
Virgin spermatheca59 44 of 4 0.55Down
Mated spermatheca68 64 of 4 0.63Down
Adult carcass145 84 of 4 1.30Up
Larval CNS102 24 of 4 0.94None
Larval Salivary gland207 104 of 4 1.90Up
Larval midgut96 54 of 4 0.89None
Larval tubule127 74 of 4 1.20None
Larval hindgut117 64 of 4 1.08None
Larval fat body100 34 of 4 0.90None
Larval trachea92 84 of 4 0.85Down
Larval carcass108 104 of 4 0.99None
S2 cells (growing)238 84 of 4 2.19Up
Whole fly108 34 of 4

Looking for FBgn0035793. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime