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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035795 through 18771 annotations produced 1 hits


Annotation Number : CG16998
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035795
Gbrowse : chr3L:7532159-7532936 (-) // 100.0 //
Probeset : 1631986_at
Accessions : protein= NP_648134;, nucleotide= NM_139877;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0035795.
Homophila reports that CG16998 is a close match (3e-12) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_115781), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).
VDRC has 3 RNAi stocks for FBgn0035795 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 4.60None
Head2 10 of 4 4.80None
Eye0 00 of 4 1.59None
Thoracicoabdominal ganglion1 00 of 4 2.90None
Salivary gland12 60 of 428.82None
Crop5 10 of 412.00None
Midgut2 10 of 4 5.20None
Tubule4 10 of 4 9.80Up
Hindgut3 10 of 4 8.20None
Heart2 10 of 4 5.65None
Fat body5 20 of 411.94Up
Ovary1 00 of 4 3.40None
Testis2 00 of 4 5.20Up
Male accessory glands4 10 of 4 9.80None
Virgin spermatheca1 00 of 4 3.41Up
Mated spermatheca5 10 of 412.59Up
Adult carcass3 10 of 4 8.80None
Larval CNS3 31 of 4 7.29None
Larval Salivary gland5 21 of 412.53None
Larval midgut2 00 of 4 5.12None
Larval tubule4 00 of 411.40Up
Larval hindgut2 00 of 4 5.18None
Larval fat body2 00 of 4 6.90None
Larval trachea1 10 of 4 4.59None
Larval carcass2 00 of 4 6.82None
S2 cells (growing)2 00 of 4 5.12None
Whole fly0 00 of 4

Looking for FBgn0035795. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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