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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035797 through 18771 annotations produced 2 hits



(CG14837):

Annotation Number : CG14837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035797
Gbrowse : chr3L:7549757-7552922 (-) // 100.0 //
Probeset : 1638151_a_at
Accessions : protein= NP_648136;, nucleotide= NM_139879;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035797.
BioGrid reports that CG14837 interacts with CG4394 CG4582 .
VDRC has 3 RNAi stocks for FBgn0035797 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head2 ± 00 of 4 0.60None
Eye2 ± 10 of 4 0.58None
Thoracicoabdominal ganglion1 ± 00 of 4 0.40None
Salivary gland2 ± 00 of 4 0.73None
Crop1 ± 00 of 4 0.40None
Midgut6 ± 10 of 4 2.00None
Tubule1 ± 00 of 4 0.40Down
Hindgut1 ± 00 of 4 0.30None
Heart0 ± 00 of 4 0.19None
Fat body1 ± 10 of 4 0.50None
Ovary2 ± 10 of 4 0.80None
Testis1 ± 10 of 4 0.50None
Male accessory glands6 ± 20 of 4 1.80None
Virgin spermatheca1 ± 00 of 4 0.35None
Mated spermatheca1 ± 00 of 4 0.36None
Adult carcass4 ± 10 of 4 1.20None
Larval CNS2 ± 10 of 4 0.65None
Larval Salivary gland0 ± 00 of 4 0.24None
Larval midgut1 ± 00 of 4 0.38None
Larval tubule1 ± 00 of 4 0.30None
Larval hindgut0 ± 00 of 4 0.21None
Larval fat body3 ± 10 of 4 0.90None
Larval trachea0 ± 00 of 4 0.24None
Larval carcass1 ± 00 of 4 0.32None
S2 cells (growing)2 ± 00 of 4 0.74None
Whole fly3 ± 10 of 4



(CG14837):

Annotation Number : CG14837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035797
Gbrowse : chr3L:7548967-7553313 (-) // 100.0 //
Probeset : 1630219_at
Accessions : protein= NP_648136;, nucleotide= NM_139879;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035797.
BioGrid reports that CG14837 interacts with CG4394 CG4582 .
VDRC has 3 RNAi stocks for FBgn0035797 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.20None
Head1 ± 00 of 4 1.00None
Eye0 ± 00 of 4 0.69None
Thoracicoabdominal ganglion0 ± 00 of 4 0.90None
Salivary gland4 ± 30 of 4 4.59None
Crop2 ± 10 of 4 2.30None
Midgut0 ± 00 of 4 0.70None
Tubule0 ± 00 of 4 0.80None
Hindgut0 ± 00 of 4 0.90None
Heart1 ± 00 of 4 1.23None
Fat body0 ± 00 of 4 0.87None
Ovary1 ± 00 of 4 1.50None
Testis1 ± 00 of 4 1.30None
Male accessory glands1 ± 00 of 4 1.30None
Virgin spermatheca0 ± 00 of 4 0.64None
Mated spermatheca0 ± 00 of 4 0.77None
Adult carcass2 ± 00 of 4 2.10None
Larval CNS2 ± 10 of 4 2.15None
Larval Salivary gland1 ± 00 of 4 1.62None
Larval midgut0 ± 00 of 4 0.69None
Larval tubule2 ± 10 of 4 2.70None
Larval hindgut0 ± 00 of 4 0.67None
Larval fat body1 ± 00 of 4 1.30None
Larval trachea0 ± 00 of 4 0.54None
Larval carcass0 ± 00 of 4 0.62None
S2 cells (growing)0 ± 00 of 4 0.33None
Whole fly1 ± 00 of 4

Looking for FBgn0035797. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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