FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035802 through 18771 annotations produced 3 hits

(CG33275):

Annotation Number : CG7520
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035802
Gbrowse : chr3L:7586205-7597077 (+) // 100.0 //
Probeset : 1628945_at
Accessions : protein= NP_996015; /// NP_996016; /// NP_996017;, nucleotide= NM_206293; /// NM_206294; /// NM_206295;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005089 //
FlyMine data for FBgn0035802.
TRiP has 1 RNAi stocks for FBgn0035802 available for purchase.
VDRC has 6 RNAi stocks for FBgn0035802 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.40	None
Head	0 ± 0	0 of 4	0.30	None
Eye	0 ± 0	0 of 4	0.38	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.50	None
Salivary gland	2 ± 0	0 of 4	1.18	None
Crop	0 ± 0	0 of 4	0.40	None
Midgut	1 ± 0	0 of 4	0.70	None
Tubule	1 ± 0	0 of 4	0.80	None
Hindgut	1 ± 0	0 of 4	0.50	None
Heart	0 ± 0	0 of 4	0.45	None
Fat body	0 ± 0	0 of 4	0.44	None
Ovary	0 ± 0	0 of 4	0.40	None
Testis	0 ± 0	0 of 4	0.40	None
Male accessory glands	1 ± 0	0 of 4	0.60	None
Virgin spermatheca	1 ± 0	0 of 4	0.57	None
Mated spermatheca	0 ± 0	0 of 4	0.35	None
Adult carcass	2 ± 0	0 of 4	1.00	None
Larval CNS	0 ± 0	0 of 4	0.25	None
Larval Salivary gland	1 ± 0	0 of 4	0.51	None
Larval midgut	1 ± 0	0 of 4	0.71	None
Larval tubule	0 ± 0	0 of 4	0.30	None
Larval hindgut	0 ± 0	0 of 4	0.44	None
Larval fat body	1 ± 0	0 of 4	0.70	None
Larval trachea	0 ± 0	0 of 4	0.29	None
Larval carcass	1 ± 0	0 of 4	0.61	None
S2 cells (growing)	0 ± 0	0 of 4	0.25	None
Whole fly	1 ± 1	0 of 4

(CG33275):

Annotation Number : CG33167
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035802
Gbrowse : chr3L:7613364-7632681 (+) // 100.0 //
Probeset : 1639074_at
Accessions : protein= NP_996015; /// NP_996016; /// NP_996017;, nucleotide= NM_206293; /// NM_206294; /// NM_206295;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005089 //
FlyMine data for FBgn0035802.
TRiP has 1 RNAi stocks for FBgn0035802 available for purchase.
VDRC has 6 RNAi stocks for FBgn0035802 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	87 ± 3	4 of 4	0.60	Down
Head	191 ± 8	4 of 4	1.40	Up
Eye	293 ± 7	4 of 4	2.13	Up
Thoracicoabdominal ganglion	83 ± 3	4 of 4	0.60	Down
Salivary gland	326 ± 9	4 of 4	2.37	Up
Crop	267 ± 6	4 of 4	1.90	Up
Midgut	34 ± 2	4 of 4	0.20	Down
Tubule	20 ± 3	4 of 4	0.10	Down
Hindgut	622 ± 15	4 of 4	4.50	Up
Heart	79 ± 11	4 of 4	0.58	Down
Fat body	83 ± 13	4 of 4	0.61	Down
Ovary	236 ± 3	4 of 4	1.70	Up
Testis	103 ± 3	4 of 4	0.80	Down
Male accessory glands	57 ± 2	4 of 4	0.40	Down
Virgin spermatheca	131 ± 5	4 of 4	0.95	None
Mated spermatheca	159 ± 15	4 of 4	1.15	None
Adult carcass	170 ± 9	4 of 4	1.20	None
Larval CNS	184 ± 20	4 of 4	1.34	Up
Larval Salivary gland	82 ± 3	4 of 4	0.60	Down
Larval midgut	23 ± 3	4 of 4	0.17	Down
Larval tubule	11 ± 0	4 of 4	0.10	Down
Larval hindgut	559 ± 22	4 of 4	4.06	Up
Larval fat body	214 ± 36	4 of 4	1.60	None
Larval trachea	387 ± 28	4 of 4	2.81	Up
Larval carcass	54 ± 3	4 of 4	0.40	Down
S2 cells (growing)	23 ± 2	4 of 4	0.17	Down
Whole fly	137 ± 9	4 of 4

(CG33275):

Annotation Number : CG7515
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035802
Gbrowse : chr3L:7609150-7610734 (+) // 100.0 //
Probeset : 1637212_at
Accessions : protein= NP_996015; /// NP_996016; /// NP_996017;, nucleotide= NM_206293; /// NM_206294; /// NM_206295;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005089 //
FlyMine data for FBgn0035802.
TRiP has 1 RNAi stocks for FBgn0035802 available for purchase.
VDRC has 6 RNAi stocks for FBgn0035802 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	1.40	None
Head	3 ± 1	0 of 4	1.50	None
Eye	6 ± 2	1 of 4	2.46	None
Thoracicoabdominal ganglion	6 ± 1	0 of 4	2.50	None
Salivary gland	13 ± 4	0 of 4	5.27	None
Crop	8 ± 3	0 of 4	3.30	None
Midgut	7 ± 2	0 of 4	3.00	None
Tubule	4 ± 0	0 of 4	1.90	Up
Hindgut	12 ± 1	1 of 4	4.80	Up
Heart	0 ± 0	0 of 4	0.36	None
Fat body	8 ± 2	0 of 4	3.44	Up
Ovary	3 ± 1	0 of 4	1.50	None
Testis	5 ± 0	0 of 4	2.30	Up
Male accessory glands	5 ± 2	0 of 4	2.20	None
Virgin spermatheca	5 ± 1	0 of 4	2.05	None
Mated spermatheca	6 ± 1	0 of 4	2.51	None
Adult carcass	6 ± 3	0 of 4	2.60	None
Larval CNS	4 ± 3	0 of 4	1.86	None
Larval Salivary gland	3 ± 0	0 of 4	1.45	None
Larval midgut	9 ± 1	1 of 4	3.78	Up
Larval tubule	5 ± 2	0 of 4	2.30	None
Larval hindgut	6 ± 1	0 of 4	2.77	Up
Larval fat body	6 ± 2	0 of 4	2.70	None
Larval trachea	8 ± 2	0 of 4	3.53	Up
Larval carcass	11 ± 1	0 of 4	4.51	Up
S2 cells (growing)	8 ± 1	0 of 4	3.28	Up
Whole fly	2 ± 1	0 of 4

Looking for FBgn0035802. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720