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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035812 through 18771 annotations produced 1 hits



(CG7457):

Annotation Number : CG7457
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035812
Gbrowse : chr3L:7714997-7719542 (-) // 100.0 //
Probeset : 1629369_at
Accessions : protein= NP_648150;, nucleotide= NM_139893;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0035812.
BDGP gene expression has embryonic in situ data for CG7457: 15 pix of staining in 10 body parts.
Homophila reports that CG7457 is a close match (7e-12) to human gene ANOP2;BCOR;KIAA1575;MAA2;MCOPS2 (NP_060215), a gene associated with Microphthalmia, syndromic 2, 300166 (3).
VDRC has 3 RNAi stocks for FBgn0035812 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 12 of 4 0.10Down
Head21 14 of 4 0.30Down
Eye15 23 of 4 0.20Down
Thoracicoabdominal ganglion11 10 of 4 0.10Down
Salivary gland47 13 of 4 0.63Down
Crop45 14 of 4 0.60Down
Midgut38 44 of 4 0.50Down
Tubule44 24 of 4 0.60Down
Hindgut30 34 of 4 0.40Down
Heart27 14 of 4 0.37Down
Fat body29 34 of 4 0.38Down
Ovary170 34 of 4 2.30Up
Testis30 24 of 4 0.40Down
Male accessory glands36 03 of 4 0.50Down
Virgin spermatheca19 24 of 4 0.26Down
Mated spermatheca25 04 of 4 0.34Down
Adult carcass28 14 of 4 0.40Down
Larval CNS41 24 of 4 0.55Down
Larval Salivary gland51 74 of 4 0.68Down
Larval midgut25 30 of 4 0.33Down
Larval tubule116 14 of 4 1.50Up
Larval hindgut37 34 of 4 0.49Down
Larval fat body29 34 of 4 0.40Down
Larval trachea65 124 of 4 0.86None
Larval carcass51 34 of 4 0.68Down
S2 cells (growing)79 14 of 4 1.06None
Whole fly75 24 of 4

Looking for FBgn0035812. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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