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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035813 through 18771 annotations produced 1 hits


Annotation Number : CG8492
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035813
Gbrowse : chr3L:7721263-7725087 (-) // 100.0 //
Probeset : 1636158_at
Accessions : protein= NP_648151;, nucleotide= NM_139894;
Interpro : "0003796 // lysozyme activity // inferred from sequence or structural similarity /// 0003796 // lysozyme activity // non
FlyMine data for FBgn0035813.
BDGP gene expression has embryonic in situ data for CG8492: 4 pix of staining in 1 body parts.
Homophila reports that CG8492 is a close match (1e-18) to human gene LYZ (NP_000230), a gene associated with Amyloidosis, renal, 105200 (3).
VDRC has 3 RNAi stocks for FBgn0035813 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 1.40None
Head3 00 of 4 1.30None
Eye1 00 of 4 0.51None
Thoracicoabdominal ganglion2 00 of 4 0.90None
Salivary gland13 20 of 4 5.77Up
Crop29 14 of 413.00Up
Midgut4 10 of 4 1.70None
Tubule6 00 of 4 3.00Up
Hindgut3 10 of 4 1.60None
Heart59 64 of 426.21Up
Fat body11 42 of 4 5.12Up
Ovary1 00 of 4 0.50None
Testis5 10 of 4 2.20None
Male accessory glands8 30 of 4 3.70None
Virgin spermatheca6 10 of 4 2.67None
Mated spermatheca10 22 of 4 4.44Up
Adult carcass8 10 of 4 3.80Up
Larval CNS7 32 of 4 3.32Up
Larval Salivary gland3 10 of 4 1.31None
Larval midgut1 00 of 4 0.85None
Larval tubule1 00 of 4 0.80None
Larval hindgut12 03 of 4 5.62Up
Larval fat body4 10 of 4 2.10None
Larval trachea78 164 of 434.48Up
Larval carcass174 114 of 476.69Up
S2 cells (growing)3 00 of 4 1.42None
Whole fly2 00 of 4

Looking for FBgn0035813. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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