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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035815 through 18771 annotations produced 2 hits



(CG7422):

Annotation Number : CT37403
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035815
Gbrowse : chr3L:7726552-7727098 (-) // 100.0 //
Probeset : 1635412_at
Accessions : protein= NP_001036593; /// NP_001163372;, nucleotide= NM_001043128; /// NM_001169901;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
Interpro : 0004888 // transmembrane receptor activity // inferred from sequence or structural similarity
FlyMine data for FBgn0035815.
VDRC has 2 RNAi stocks for FBgn0035815 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head28 ± 24 of 4 2.00Up
Eye6 ± 20 of 4 0.42Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.40Down
Salivary gland60 ± 84 of 4 4.17Up
Crop687 ± 174 of 447.10Up
Midgut9 ± 10 of 4 0.70None
Tubule26 ± 102 of 4 1.80None
Hindgut468 ± 54 of 432.10Up
Heart5 ± 11 of 4 0.39Down
Fat body5 ± 30 of 4 0.34Down
Ovary3 ± 01 of 4 0.30Down
Testis6 ± 02 of 4 0.40Down
Male accessory glands7 ± 20 of 4 0.50Down
Virgin spermatheca3 ± 10 of 4 0.26Down
Mated spermatheca7 ± 10 of 4 0.51Down
Adult carcass25 ± 24 of 4 1.70Up
Larval CNS4 ± 12 of 4 0.31Down
Larval Salivary gland4 ± 00 of 4 0.28Down
Larval midgut5 ± 20 of 4 0.38Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut55 ± 74 of 4 3.81Up
Larval fat body6 ± 10 of 4 0.40Down
Larval trachea8 ± 10 of 4 0.60None
Larval carcass18 ± 53 of 4 1.29None
S2 cells (growing)4 ± 10 of 4 0.34Down
Whole fly14 ± 22 of 4



(CG7422):

Annotation Number : CG7422
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035815
Gbrowse : chr3L:7729194-7731041 (-) // 100.0 //
Probeset : 1637851_at
Accessions : protein= NP_001036593; /// NP_001163372;, nucleotide= NM_001043128; /// NM_001169901;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
Interpro : 0004888 // transmembrane receptor activity // inferred from sequence or structural similarity
FlyMine data for FBgn0035815.
Homophila reports that CG7422 is a close match (1e-46) to human gene CD36;CHDS7 (NP_001001548), a gene associated with Platelet glycoprotein IV deficiency, 608404 (3);[Macrothrombocytopenia] (1);{Coronary heart disease, susceptibility to, 7}, 610938 (3);{Malaria, cerebral, reduced risk of}, 611162 (3);{Malaria, cerebral, susceptibility to}, 611162 (3).
VDRC has 2 RNAi stocks for FBgn0035815 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.20Down
Head47 ± 54 of 4 2.50Up
Eye2 ± 11 of 4 0.14Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.20Down
Salivary gland64 ± 54 of 4 3.35Up
Crop844 ± 474 of 444.10Up
Midgut5 ± 02 of 4 0.30Down
Tubule21 ± 92 of 4 1.10None
Hindgut479 ± 104 of 425.00Up
Heart0 ± 00 of 4 0.03Down
Fat body2 ± 10 of 4 0.13Down
Ovary0 ± 00 of 4 0.00Down
Testis4 ± 00 of 4 0.20Down
Male accessory glands3 ± 10 of 4 0.20Down
Virgin spermatheca0 ± 00 of 4 0.03Down
Mated spermatheca2 ± 10 of 4 0.13Down
Adult carcass35 ± 14 of 4 1.90Up
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut0 ± 00 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut50 ± 14 of 4 2.65Up
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea4 ± 20 of 4 0.24Down
Larval carcass10 ± 22 of 4 0.53Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly19 ± 14 of 4

Looking for FBgn0035815. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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