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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035816 through 18771 annotations produced 1 hits



(CG13685):

Annotation Number : CG13685
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035816
Gbrowse : chr3L:7740716-7741466 (+) // 100.0 //
Probeset : 1630243_at
Accessions : protein= NP_648154;, nucleotide= NM_139897;
FlyMine data for FBgn0035816.
VDRC has 3 RNAi stocks for FBgn0035816 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 ± 24 of 412.10Up
Head14 ± 40 of 4 2.20None
Eye5 ± 11 of 4 0.79None
Thoracicoabdominal ganglion53 ± 104 of 4 7.90Up
Salivary gland5 ± 20 of 4 0.85None
Crop12 ± 20 of 4 1.80None
Midgut6 ± 20 of 4 0.90None
Tubule4 ± 00 of 4 0.70Down
Hindgut6 ± 10 of 4 0.90None
Heart7 ± 11 of 4 1.15None
Fat body5 ± 40 of 4 0.83None
Ovary3 ± 10 of 4 0.50None
Testis2 ± 00 of 4 0.40None
Male accessory glands3 ± 10 of 4 0.50None
Virgin spermatheca8 ± 10 of 4 1.24None
Mated spermatheca5 ± 10 of 4 0.82None
Adult carcass6 ± 20 of 4 1.00None
Larval CNS8 ± 10 of 4 1.26None
Larval Salivary gland7 ± 30 of 4 1.07None
Larval midgut3 ± 00 of 4 0.46None
Larval tubule5 ± 10 of 4 0.80None
Larval hindgut4 ± 00 of 4 0.60None
Larval fat body4 ± 10 of 4 0.70None
Larval trachea3 ± 20 of 4 0.47None
Larval carcass8 ± 20 of 4 1.25None
S2 cells (growing)3 ± 10 of 4 0.56None
Whole fly6 ± 20 of 4

Looking for FBgn0035816. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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