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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035817 through 18771 annotations produced 1 hits



(CG7409):

Annotation Number : CG7409
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035817
Gbrowse : chr3L:7747508-7748274 (+) // 100.0 //
Probeset : 1627577_at
Accessions : protein= NP_648155;, nucleotide= NM_139898;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred fro
FlyMine data for FBgn0035817.
BDGP gene expression has embryonic in situ data for CG7409: 4 pix of staining in 1 body parts.
Homophila reports that CG7409 is a close match (3e-12) to human gene CRYA2;CRYAB;CTPP2 (NP_001876), a gene associated with Cataract, posterior polar 2 (3);Myopathy, cardioskeletal, desmin-related, with cataract, 608810 (3).
VDRC has 2 RNAi stocks for FBgn0035817 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 04 of 4 0.00Down
Head1198 ± 544 of 4 1.30Up
Eye276 ± 454 of 4 0.30Down
Thoracicoabdominal ganglion54 ± 144 of 4 0.10Down
Salivary gland34 ± 62 of 4 0.04Down
Crop29 ± 54 of 4 0.00Down
Midgut7 ± 10 of 4 0.00Down
Tubule5 ± 10 of 4 0.00Down
Hindgut14 ± 14 of 4 0.00Down
Heart22 ± 04 of 4 0.02Down
Fat body35 ± 144 of 4 0.04Down
Ovary4 ± 00 of 4 0.00Down
Testis115 ± 74 of 4 0.10Down
Male accessory glands18 ± 31 of 4 0.00Down
Virgin spermatheca17 ± 61 of 4 0.02Down
Mated spermatheca18 ± 82 of 4 0.02Down
Adult carcass3827 ± 2704 of 4 4.20Up
Larval CNS6 ± 22 of 4 0.01Down
Larval Salivary gland7 ± 10 of 4 0.01Down
Larval midgut37 ± 34 of 4 0.04Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut20 ± 13 of 4 0.02Down
Larval fat body5 ± 10 of 4 0.00Down
Larval trachea12 ± 52 of 4 0.01Down
Larval carcass55 ± 74 of 4 0.06Down
S2 cells (growing)5 ± 10 of 4 0.01Down
Whole fly906 ± 644 of 4

Looking for FBgn0035817. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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