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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035824 through 18771 annotations produced 1 hits



(CG8281):

Annotation Number : CG8281
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035824
Gbrowse : chr3L:7905562-7906753 (+) // 100.0 //
Probeset : 1641043_at
Accessions : protein= NP_648161;, nucleotide= NM_139904;
Interpro : 0042802 // identical protein binding // inferred from physical interaction
FlyMine data for FBgn0035824.
BDGP gene expression has embryonic in situ data for CG8281: 4 pix of staining in 1 body parts.
BioGrid reports that CG8281 interacts with CG8281 .
VDRC has 1 RNAi stocks for FBgn0035824 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 ± 14 of 4 1.90Up
Head39 ± 04 of 4 1.20None
Eye63 ± 24 of 4 1.90Up
Thoracicoabdominal ganglion51 ± 24 of 4 1.50Up
Salivary gland64 ± 73 of 4 1.92Up
Crop55 ± 54 of 4 1.70Up
Midgut40 ± 24 of 4 1.20None
Tubule37 ± 34 of 4 1.10None
Hindgut59 ± 14 of 4 1.80Up
Heart37 ± 24 of 4 1.11None
Fat body28 ± 44 of 4 0.84None
Ovary48 ± 34 of 4 1.40Up
Testis14 ± 04 of 4 0.40Down
Male accessory glands38 ± 44 of 4 1.20None
Virgin spermatheca22 ± 22 of 4 0.68Down
Mated spermatheca24 ± 14 of 4 0.71None
Adult carcass44 ± 14 of 4 1.30None
Larval CNS35 ± 04 of 4 1.04None
Larval Salivary gland29 ± 24 of 4 0.87None
Larval midgut21 ± 14 of 4 0.65Down
Larval tubule28 ± 24 of 4 0.80None
Larval hindgut26 ± 14 of 4 0.78None
Larval fat body20 ± 22 of 4 0.60Down
Larval trachea49 ± 54 of 4 1.46Up
Larval carcass21 ± 12 of 4 0.65Down
S2 cells (growing)37 ± 24 of 4 1.11None
Whole fly33 ± 34 of 4

Looking for FBgn0035824. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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