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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035831 through 18771 annotations produced 1 hits



(CG8038):

Annotation Number : CG8038
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035831
Gbrowse : chr3L:7970904-7971705 (-) // 100.0 //
Probeset : 1635649_at
Accessions : protein= NP_648168;, nucleotide= NM_139911;
Pathway : 0000172 // ribonuclease MRP complex // inferred from electronic annotation /// 0005655 // nucleolar ribonuclease P compl
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0004526 // ribonuclease P activity // inferred from se
FlyMine data for FBgn0035831.
VDRC has 3 RNAi stocks for FBgn0035831 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 04 of 4 0.50Down
Head42 24 of 4 0.40Down
Eye64 34 of 4 0.66Down
Thoracicoabdominal ganglion47 24 of 4 0.50Down
Salivary gland55 53 of 4 0.57Down
Crop71 44 of 4 0.70Down
Midgut56 34 of 4 0.60Down
Tubule51 14 of 4 0.50Down
Hindgut60 14 of 4 0.60Down
Heart67 44 of 4 0.69Down
Fat body49 54 of 4 0.51Down
Ovary211 74 of 4 2.20Up
Testis26 14 of 4 0.30Down
Male accessory glands75 44 of 4 0.80Down
Virgin spermatheca52 54 of 4 0.53Down
Mated spermatheca54 44 of 4 0.56Down
Adult carcass44 24 of 4 0.50Down
Larval CNS89 84 of 4 0.92None
Larval Salivary gland76 04 of 4 0.78Down
Larval midgut33 24 of 4 0.34Down
Larval tubule48 34 of 4 0.50Down
Larval hindgut62 14 of 4 0.64Down
Larval fat body46 44 of 4 0.50Down
Larval trachea131 84 of 4 1.34Up
Larval carcass61 24 of 4 0.63Down
S2 cells (growing)146 24 of 4 1.50Up
Whole fly98 34 of 4

Looking for FBgn0035831. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime