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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035833 through 18771 annotations produced 1 hits



(CG7565):

Annotation Number : CG7565
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035833
Gbrowse : chr3L:8081097-8084872 (-) // 100.0 //
Probeset : 1625569_at
Accessions : protein= NP_001137906; /// NP_648171;, nucleotide= NM_001144434; /// NM_139914;
Interpro : "0004568 // chitinase activity // inferred from sequence or structural similarity /// 0004568 // chitinase activity // i
FlyMine data for FBgn0035833.
BDGP gene expression has embryonic in situ data for CG7565: 8 pix of staining in 5 body parts.
Homophila reports that CG7565 is a close match (5e-136) to human gene DLX2;DYLX2;DYX2;KIAA0319 (NP_055624), a gene associated with {Dyslexia, susceptibility to, 2}, 600202 (3).
TRiP has 1 RNAi stocks for FBgn0035833 available for purchase.
VDRC has 5 RNAi stocks for FBgn0035833 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain126 24 of 4 6.10Up
Head44 34 of 4 2.20Up
Eye17 13 of 4 0.82None
Thoracicoabdominal ganglion110 64 of 4 5.30Up
Salivary gland84 44 of 4 4.05Up
Crop7 10 of 4 0.40Down
Midgut65 44 of 4 3.10Up
Tubule46 34 of 4 2.20Up
Hindgut28 14 of 4 1.40Up
Heart14 24 of 4 0.71None
Fat body9 21 of 4 0.43Down
Ovary27 24 of 4 1.30None
Testis15 04 of 4 0.70Down
Male accessory glands93 54 of 4 4.50Up
Virgin spermatheca9 20 of 4 0.47Down
Mated spermatheca11 10 of 4 0.53Down
Adult carcass15 00 of 4 0.70Down
Larval CNS68 74 of 4 3.28Up
Larval Salivary gland67 34 of 4 3.23Up
Larval midgut83 12 of 4 4.01Up
Larval tubule37 04 of 4 1.80Up
Larval hindgut33 34 of 4 1.61Up
Larval fat body15 22 of 4 0.80None
Larval trachea16 34 of 4 0.79None
Larval carcass13 11 of 4 0.66Down
S2 cells (growing)190 94 of 4 9.14Up
Whole fly20 14 of 4

Looking for FBgn0035833. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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