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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035838 through 18771 annotations produced 1 hits



lariat debranching enzyme (ldbr):

Annotation Number : CG7942
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035838
Gbrowse : chr3L:8114600-8116678 (+) // 100.0 //
Probeset : 1626571_at
Accessions : protein= NP_648175; /// NP_996022;, nucleotide= NM_139918; /// NM_206300;
Pathway : via transesterification reactions // inferred from sequence or structural similarity /// 0006396 // RNA processing // i
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0035838.
VDRC has 1 RNAi stocks for FBgn0035838 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 04 of 4 0.30Down
Head18 ± 03 of 4 0.30Down
Eye10 ± 13 of 4 0.19Down
Thoracicoabdominal ganglion13 ± 10 of 4 0.20Down
Salivary gland29 ± 30 of 4 0.50Down
Crop28 ± 22 of 4 0.50Down
Midgut25 ± 13 of 4 0.40Down
Tubule27 ± 11 of 4 0.50Down
Hindgut26 ± 12 of 4 0.40Down
Heart18 ± 14 of 4 0.32Down
Fat body17 ± 10 of 4 0.30Down
Ovary162 ± 34 of 4 2.80Up
Testis26 ± 14 of 4 0.50Down
Male accessory glands29 ± 23 of 4 0.50Down
Virgin spermatheca15 ± 31 of 4 0.27Down
Mated spermatheca28 ± 21 of 4 0.49Down
Adult carcass20 ± 50 of 4 0.30Down
Larval CNS104 ± 64 of 4 1.79Up
Larval Salivary gland46 ± 63 of 4 0.80None
Larval midgut19 ± 11 of 4 0.33Down
Larval tubule38 ± 14 of 4 0.70Down
Larval hindgut20 ± 02 of 4 0.35Down
Larval fat body22 ± 53 of 4 0.40Down
Larval trachea38 ± 34 of 4 0.66Down
Larval carcass19 ± 21 of 4 0.33Down
S2 cells (growing)43 ± 04 of 4 0.75Down
Whole fly58 ± 44 of 4

Looking for FBgn0035838. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime