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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035839 through 18771 annotations produced 1 hits



(CG7550):

Annotation Number : CG7550
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035839
Gbrowse : chr3L:8116710-8117631 (-) // 100.0 //
Probeset : 1637265_at
Accessions : protein= NP_648176;, nucleotide= NM_139919;
Interpro : 0047800 // cysteamine dioxygenase activity // inferred from electronic annotation
FlyMine data for FBgn0035839.
VDRC has 3 RNAi stocks for FBgn0035839 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 ± 24 of 4 1.50Up
Head74 ± 44 of 4 1.10None
Eye96 ± 24 of 4 1.42Up
Thoracicoabdominal ganglion99 ± 64 of 4 1.50Up
Salivary gland104 ± 34 of 4 1.53Up
Crop99 ± 34 of 4 1.50Up
Midgut68 ± 34 of 4 1.00None
Tubule126 ± 64 of 4 1.90Up
Hindgut73 ± 34 of 4 1.10None
Heart74 ± 44 of 4 1.09None
Fat body63 ± 74 of 4 0.94None
Ovary95 ± 24 of 4 1.40Up
Testis104 ± 24 of 4 1.50Up
Male accessory glands118 ± 34 of 4 1.70Up
Virgin spermatheca70 ± 54 of 4 1.04None
Mated spermatheca63 ± 24 of 4 0.93None
Adult carcass82 ± 44 of 4 1.20Up
Larval CNS60 ± 54 of 4 0.89None
Larval Salivary gland124 ± 84 of 4 1.83Up
Larval midgut137 ± 114 of 4 2.02Up
Larval tubule510 ± 94 of 4 7.50Up
Larval hindgut89 ± 104 of 4 1.31None
Larval fat body202 ± 134 of 4 3.00Up
Larval trachea51 ± 94 of 4 0.76Down
Larval carcass114 ± 274 of 4 1.69None
S2 cells (growing)46 ± 14 of 4 0.69Down
Whole fly67 ± 14 of 4

Looking for FBgn0035839. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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